Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 91 / 4e-22 HXXXD-type acyl-transferase family protein (.1) AT3G26040 70 / 8e-15 HXXXD-type acyl-transferase family protein (.1) AT4G15400 69 / 2e-14 HXXXD-type acyl-transferase family protein (.1) AT5G23970 69 / 2e-14 HXXXD-type acyl-transferase family protein (.1) AT1G24420 67 / 7e-14 HXXXD-type acyl-transferase family protein (.1) AT4G15390 66 / 2e-13 HXXXD-type acyl-transferase family protein (.1) AT5G47950 65 / 5e-13 HXXXD-type acyl-transferase family protein (.1) AT5G47980 62 / 4e-12 HXXXD-type acyl-transferase family protein (.1) AT3G30280 61 / 1e-11 HXXXD-type acyl-transferase family protein (.1) AT3G29590 49 / 1e-07 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035932 [exp] 281 / 8e-95 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 104 / 4e-27 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 83 / 3e-19 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 82 / 7e-19 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 81 / 2e-18 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 66 / 3e-13 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 64 / 2e-12 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10026736 [exp] 62 / 5e-12 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 61 / 1e-11 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 113 / 2e-30 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 111 / 5e-30 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 94 / 3e-23 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 90 / 7e-22 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 77 / 4e-17 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 76 / 7e-17 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 74 / 3e-16 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 72 / 2e-15 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.015G127000 [exp] 72 / 2e-15 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 71 / 6e-15 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025729 pacid=23177669 polypeptide=Lus10025729 locus=Lus10025729.g ID=Lus10025729.BGIv1.0 annot-version=v1.0 ATGGGGAACATCATCCAGATGACAGAGACAATCAAGTGGCCGATTGAGACAGAGGTGACAGAAGAGAACATGGGAGATTTGGCCGGGAAGTTGGGAGGTG CGGTGAGAACCATAAATCATGAGTATTTGGATAGGCTTCACAAGGATAACAAAGCAGAGGGCTACCTGAATTTGGTGAAATCGTTCGAAGAAGAGTACAG GAAGGATGATTTCATAATGATAAGTAGCTCTTGCAGGTATCCCATCTATGGAGTGGATTTCGGGTGGGGGAAGCCTACTTCTGTTCATGGGTTTTCGGGA AGTAATAAGATGGTGGTTTTGTTGGATGCGAGAGACGGGGAAGGGGTCGAGGCTTGGGTTACGCTGGATAAGGATGACATGTCCAGATTTGAGAAGGATC CCTTTCTTCTTTGCTATGCTTGCTAG
AA sequence Show only first row Show all	>Lus10025729 pacid=23177669 polypeptide=Lus10025729 locus=Lus10025729.g ID=Lus10025729.BGIv1.0 annot-version=v1.0 MGNIIQMTETIKWPIETEVTEENMGDLAGKLGGAVRTINHEYLDRLHKDNKAEGYLNLVKSFEEEYRKDDFIMISSSCRYPIYGVDFGWGKPTSVHGFSG SNKMVVLLDARDGEGVEAWVTLDKDDMSRFEKDPFLLCYAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	0	1
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	1.0	0.9666
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	5.1	0.9376
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	5.9	0.9190
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	9.5	0.9198
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	9.7	0.9207
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	12.0	0.9121
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	13.3	0.8751
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	13.4	0.9342
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	13.6	0.9008
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	15.1	0.9312

Compare expression of checked genes

Lus10025729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.