Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 123 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT4G15390 122 / 5e-32 HXXXD-type acyl-transferase family protein (.1) AT3G30280 116 / 9e-30 HXXXD-type acyl-transferase family protein (.1) AT5G47950 115 / 1e-29 HXXXD-type acyl-transferase family protein (.1) AT1G24430 112 / 2e-28 HXXXD-type acyl-transferase family protein (.1) AT1G24420 96 / 2e-22 HXXXD-type acyl-transferase family protein (.1) AT5G47980 96 / 3e-22 HXXXD-type acyl-transferase family protein (.1) AT5G23970 92 / 3e-21 HXXXD-type acyl-transferase family protein (.1) AT2G19070 86 / 5e-19 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G31490 75 / 3e-15 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035932 [exp] 444 / 1e-156 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 172 / 2e-50 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 129 / 1e-34 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 126 / 2e-33 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 113 / 1e-28 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 113 / 1e-28 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 113 / 1e-28 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 104 / 2e-25 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 104 / 3e-25 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 179 / 2e-53 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 166 / 1e-48 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 160 / 2e-46 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 137 / 9e-38 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 135 / 9e-37 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 130 / 5e-35 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 125 / 3e-33 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 125 / 3e-33 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 123 / 2e-32 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 123 / 2e-32 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025730 pacid=23177643 polypeptide=Lus10025730 locus=Lus10025730.g ID=Lus10025730.BGIv1.0 annot-version=v1.0 ATGGCTTTAATCGTGGATATCGTTTCTGAAGAAACAATCCGGCCGTCATCACCCGCACCTCCAAATTCGAGAATCCACAAGCTTTCATGCATGGATCAAC TCTCCCCCCCTCGATACATGCCCGTCCTCTATTCCTACGCACCGGAACAACCAGCTTCCTCCCAAAACGACGTCGTCGACAAGCTCAAATCCTCCCTCTC AACCGTTCTCACCCATTACTACCCGTTCGCCGGACGATACCACGACTCCGGCGTATCAATCGACTGCAACGGCGAAGGCGTCCCTTTCATCGTATCCCAC GTGGCTGCCGACATGCTGCCGTCACTAGAAGCACCTGACGAGACCCGATTGGTGCAGCTACTCCCCTGTCGTCCCCAACACGAAAACAGAGATCCCGCCG ACGGCAAATTACTGTTCCTAGCCGTTCGAGTAAACTTTTTCAAATGCGGCGGGATCGCAATTGGTATATGTGCGTGGCACCGAATTTCTGACGCGTCGAC CCTCGCTTGCTTGGCCCAATGTTGGGCCGCCATCTGTCGTGGGGACCCTGCGGTCTACAAGGTCCTTCCGGGAGCTGTCGTGGACTACACCTCCTTCTTC CCGTCGCAAGACCTCCGTTACTTAACAGCTGCGCCGACGTCATCCGACGTCAGTACCATCCACCACGATGATGCTGAGAGTACGGGCGTGGGCAAACGGG TGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCACAACGAAAAGTTTGCGCCGCCAGCCGACTCGAGTTGA
AA sequence Show only first row Show all	>Lus10025730 pacid=23177643 polypeptide=Lus10025730 locus=Lus10025730.g ID=Lus10025730.BGIv1.0 annot-version=v1.0 MALIVDIVSEETIRPSSPAPPNSRIHKLSCMDQLSPPRYMPVLYSYAPEQPASSQNDVVDKLKSSLSTVLTHYYPFAGRYHDSGVSIDCNGEGVPFIVSH VAADMLPSLEAPDETRLVQLLPCRPQHENRDPADGKLLFLAVRVNFFKCGGIAIGICAWHRISDASTLACLAQCWAAICRGDPAVYKVLPGAVVDYTSFF PSQDLRYLTAAPTSSDVSTIHHDDAESTGVGKRVLXXXXXXXXXXXXXXXXXYHNEKFAPPADSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	0	1
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	1.0	0.9666
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	7.2	0.9652
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	7.4	0.9574
AT2G43870			Pectin lyase-like superfamily ...		Lus10002126 [exp]	7.9	0.9095
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	8.7	0.9601
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	9.4	0.9587
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	11.5	0.9566
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10017634 [exp]	11.7	0.9326
AT1G62422			unknown protein		Lus10015161 [exp]	12.1	0.8704
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	13.1	0.9479

Compare expression of checked genes

Lus10025730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.