Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012740 [exp] 42 / 2e-05 ND 37 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025731 pacid=23177599 polypeptide=Lus10025731 locus=Lus10025731.g ID=Lus10025731.BGIv1.0 annot-version=v1.0 ATGAATTTCTCAATGGTCAAGCTCTTCCTCGTCTTGGGACTGTTAGCCACCTCATGCGTCGCTCAGGCCCCAACTGCCACCCCAACACCGGCTCCCGCCG CCGTACCCACGCCTGCAGCAACAACCCCCGCTCCTACGCCTGCCGCAACTCCCACCCCAGCAGCGCCGGCGCCGGCTCCTCTATCCCCAGCTCCCACACC TGCTCCTGCCACATCACCAACTCCTTCGCCCTCCTCTTCCCCTGCTCCTTCCATGTCCCCCGATGCCGCTTCTCCCCCAGCTCCTCCGCCTACATCCCCA TCCGCCGAACCAACTCCTGACGATTCCCCCGCTGGATCCTTGGCCGCTGGATTCGACAGAGTGTTCGTCGCCGGTTCTGCGTTGTCCGCTGCTTTCTTGG CTTTCGTTGCTTTGGCGTAA
AA sequence Show only first row Show all	>Lus10025731 pacid=23177599 polypeptide=Lus10025731 locus=Lus10025731.g ID=Lus10025731.BGIv1.0 annot-version=v1.0 MNFSMVKLFLVLGLLATSCVAQAPTATPTPAPAAVPTPAATTPAPTPAATPTPAAPAPAPLSPAPTPAPATSPTPSPSSSPAPSMSPDAASPPAPPPTSP SAEPTPDDSPAGSLAAGFDRVFVAGSALSAAFLAFVALA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025731 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	3.9	0.9239
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	4.0	0.9325
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	5.3	0.9300
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	7.3	0.9074
AT3G49720			unknown protein		Lus10019279 [exp]	7.9	0.9023
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	9.2	0.9268
					Lus10038634 [exp]	9.2	0.9250
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	11.0	0.9137
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	11.5	0.9018
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	13.2	0.9210

Compare expression of checked genes

Lus10025731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.