Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 128 / 4e-33 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 54 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 44 / 0.0001 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT4G02730 43 / 0.0002 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035930 [exp] 363 / 8e-127 AT3G49180 59 / 6e-10 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013988 [exp] 133 / 8e-34 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016759 [exp] 86 / 5e-18 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015407 [exp] 67 / 2e-12 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 50 / 2e-06 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 49 / 5e-06 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10043473 [exp] 43 / 0.0003 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10034114 [exp] 43 / 0.0004 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10006916 [exp] 42 / 0.0006 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384200 [exp] 322 / 1e-107 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G027200 [exp] 134 / 5e-35 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G093300 [exp] 108 / 1e-25 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 54 / 6e-08 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.006G239600 [exp] 46 / 3e-05 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 44 / 0.0001 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 44 / 0.0002 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10025732 pacid=23177571 polypeptide=Lus10025732 locus=Lus10025732.g ID=Lus10025732.BGIv1.0 annot-version=v1.0 ATGTCACCTTCTTCATCTGACATCATACTCACCAGCTCCCCGGACGGACCTATCACCGCCTACGACTCCTCCTCAGGCCCGGAGCCAGTAGCCCCTCTCG TCGCTTTCCCCGACGGCGGCTCCTTCTCCTACATCTTCGCCGGCGGCATTTCCGGCAAGATCCATTCTCTCTCCATTCCTTCTGGTAACCTACTAGGTTC CTTCCCTGCTCATCTTGGGTCCCCTGTTTCCTGCCTCGAAATCTCCCCCGATTGGTCCCTCCTTATTTCAGGAGGTGACGACGGTACAATCGCTGTTTTC TCCATCTTCCAATTACTGGATGATGATCGCCCTGAAAGTGAAACCACCGACGACGACATTATTATTCGGAGCTTTACTGCCCATGAAGGTCCAGTGACTT CGATTGTCCGGTGTATGGGCGTGTCTCAGCCAACTGTTGTTTCCTGCTCCATGGATTCTACTTGTAAGATGTGGAGCCTCCTGGAAGGAACCAATCTGAG GACGGTGGTATTCCCCTGTCCAATTTCAGGGGTCGCATTGGACCCATCGGAGACTGATTTCTACGCTGCCGGTTCCGATGGTGTGGTTTACAAGGGAGTT CTGAAACATGGAAGCAGGAAAGAAGCAGCAGCAGATAGTGAATTGGTTGCTGTTGCATTGTCTGGGAAACACAATGTTGCAATCGTTTCGATTGCTCTGG TGGATGGTGGGAAGAGCTTGGTATCAGCGGCGGAAGACGGGAGTGTTCATGTGAGGAAGGTTGAGAGTGGAGAAGTGAGCATGGTTATGGGGAATAATAA GCTGGAGAGCATCAGTGAGATGGTGGTGGCCAAGAGGCGGCGGCAGCAGCATATGGGTTTCAGTCAGTCGTGTCAAGGTGAAAGCTCTTCTCCTTCTTCT AGGTTGCCTGGGAAAGAGCAATGTACATTGGGGAAAGAAACAAAGGATGATGAGCTTGAGAAAGCTGCCAAGGAAGATATGAACAATGCAATTGATATGT TGGAGTCTGCAATTGATCTTTATGGGAGACTTGTGGAGCTCATTCTCAAGGAAGCCAAGAGAGGTACAACAGCGACCACCAACAGCAATTGCAGAAAGCG CAAGAATAATATTTGA
AA sequence Show only first row Show all	>Lus10025732 pacid=23177571 polypeptide=Lus10025732 locus=Lus10025732.g ID=Lus10025732.BGIv1.0 annot-version=v1.0 MSPSSSDIILTSSPDGPITAYDSSSGPEPVAPLVAFPDGGSFSYIFAGGISGKIHSLSIPSGNLLGSFPAHLGSPVSCLEISPDWSLLISGGDDGTIAVF SIFQLLDDDRPESETTDDDIIIRSFTAHEGPVTSIVRCMGVSQPTVVSCSMDSTCKMWSLLEGTNLRTVVFPCPISGVALDPSETDFYAAGSDGVVYKGV LKHGSRKEAAADSELVAVALSGKHNVAIVSIALVDGGKSLVSAAEDGSVHVRKVESGEVSMVMGNNKLESISEMVVAKRRRQQHMGFSQSCQGESSSPSS RLPGKEQCTLGKETKDDELEKAAKEDMNNAIDMLESAIDLYGRLVELILKEAKRGTTATTNSNCRKRKNNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	0	1
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	2.8	0.9548
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	4.5	0.9582
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	4.7	0.9533
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	7.5	0.9602
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	8.2	0.9580
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	12.1	0.9557
AT2G31945			unknown protein		Lus10013740 [exp]	14.5	0.9501
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10025733 [exp]	16.3	0.8962
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	19.0	0.9448
					Lus10000859 [exp]	19.3	0.9581

Compare expression of checked genes

Lus10025732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.