Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 756 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 620 / 0 riboflavin biosynthesis protein, putative (.1) AT5G59750 598 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035929 [exp] 1040 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10012751 [exp] 871 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 858 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 587 / 0 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006669 [exp] 514 / 3e-179 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 510 / 1e-175 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005882 [exp] 426 / 5e-145 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 815 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 769 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 729 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 695 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 608 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10025733 pacid=23177556 polypeptide=Lus10025733 locus=Lus10025733.g ID=Lus10025733.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCCCTTCCTGTTCATTTCCTCCGCTCCCCTTTGGCTCCCTCTCCTTCTCTAGGCTTTCCTGGCTTGCAACAAAAGGGGAACTTTAGCAATG CTGTCTTAACGGCTAGTGCTGCTATAAAATTGGTCACTAGTTTCAAAGGGGTGGTGAATCGAACTAAAGCTTCCGTCATTTCTGGAGACGGTGATCTTCT CTCTTTGCCCACAAGTGATAATACTTCAACGAACTCGCTTTCTGGGATTGACTTGCAACTTGATGCATTCAACTTTGCAACTCTCTCTGCCGAGATGACT CCCATCAGAACTAGTTTCTCTCCTGATAATGATGAATATGACTTGGATCGTCCTACTGAAGGCTTTAGTTCCATCCCTGAAGCACTTGAAGATATCCGAC TAGGCAAGTTTGTGATCGTTGTTGATGATGAAGATCGAGAAAATGAAGGTGACCTAATCATGGCAGCTTCTAAAGTAACTCCTGAAGCTATGGCATTTAT TGTCAAGCATGGAACTGGGATAGTCTGTGTAAGCATGGGAGATGAAGATTTACAGAGATTGCAACTGCCTTTGATGGTATCCACAAAGGAGAACGAAGAA AAGCTATGCACGGCTTTTACAGTGTCAGTTGATGCAAAATTTGGTACCACAACTGGTGTTTCAGCTCGCGACAGGGCAACAACTATACTGGCCCTTGCAT CGAAGGATTCCAAACCAGAAGATTTCAATCGTCCAGGTCATATATTCCCTCTTAAATATAGGGAGGGAGGGGTACTGAAGAGAGCTGGTCACACTGAAGC TTCTGCGGATCTCTCGATACTGGCTGGTTTGGAGCCTGTTGCAGTTCTCTGTGAGATTGTGGACGATGATGGGTCTATGGCCAGACTACCCAGACTCAGA GAGTTTGCAAAAGCTGAGAATCTCAAGATAATCTCGATAGCTGATCTTATCAGATTCAGGAGGAAAAGGGAGAAACTAGTAGAACGGTCTGCTGCCGCCC GGATACCAACTGTGTGGGGGCCTTTCAAAGGCTACTGTTACAGGTCATTGATTGACGGAATTGAACATATTGCCATGGTTAAAGGAGATATTGGGGAGGG AAAGGATATTCTTGTCCGGGTGCATTCAGAGTGCCTGACTGGAGATATATTTGGTTCAGCAAGATGTGATTGTGGCGATCAGCTAGCACTTGCCATGAAG CAAATTGAAGCAGCTGGTAAGGGTGTGTTGGTTTATCTACGCGGACATGAAGGTAGAGGTATCGGCTTGGGCCATAAGCTTCGCGCTTACAACCTACAAG ATGATGGCCGTGATACTGTTGAAGCCAATGAGGAGCTGGGTCTACCAGTTGACTCCCGTGAATATGGTCTCGGAGCACAGATACTGCGAGATCTAGGAGT TCGCACGATGAAGCTGATGACAAACAATCCATCAAAATACATCGGCCTCAAAGGATACGGCCTCTCGGTTGCTGGAAGAGTGCCATTGATAACTCCAATT ACAACAGAGAACAGAAGATACCTGGAAACCAAGAGGAAAAAGATGGGACATGTGTATGGTCCTGATAATGGCAGCGTTGCTGTTCCTAGTCCCCAAGATG GTTTGTTGGAGGCATAG
AA sequence Show only first row Show all	>Lus10025733 pacid=23177556 polypeptide=Lus10025733 locus=Lus10025733.g ID=Lus10025733.BGIv1.0 annot-version=v1.0 MASPLPVHFLRSPLAPSPSLGFPGLQQKGNFSNAVLTASAAIKLVTSFKGVVNRTKASVISGDGDLLSLPTSDNTSTNSLSGIDLQLDAFNFATLSAEMT PIRTSFSPDNDEYDLDRPTEGFSSIPEALEDIRLGKFVIVVDDEDRENEGDLIMAASKVTPEAMAFIVKHGTGIVCVSMGDEDLQRLQLPLMVSTKENEE KLCTAFTVSVDAKFGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASADLSILAGLEPVAVLCEIVDDDGSMARLPRLR EFAKAENLKIISIADLIRFRRKREKLVERSAAARIPTVWGPFKGYCYRSLIDGIEHIAMVKGDIGEGKDILVRVHSECLTGDIFGSARCDCGDQLALAMK QIEAAGKGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGLGAQILRDLGVRTMKLMTNNPSKYIGLKGYGLSVAGRVPLITPI TTENRRYLETKRKKMGHVYGPDNGSVAVPSPQDGLLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10025733 [exp]	0	1
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	3.5	0.8955
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	13.1	0.8645
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	13.3	0.8900
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	16.3	0.8962
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	26.3	0.8788
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	27.8	0.8878
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	28.0	0.8222
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	30.1	0.8764
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	33.5	0.8257
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	35.8	0.8794

Compare expression of checked genes

Lus10025733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.