Plant FIBer expression Database

Lus10025734 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035928
[exp]
276 / 2e-94 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072000
[exp]
54 / 6e-09 AT5G65300 41 / 6e-05 unknown protein
Potri.007G097000
[exp]
41 / 0.0002 AT5G65300 / unknown protein
Potri.005G161700
[exp]
40 / 0.0004 AT1G35210 50 / 6e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10025734 pacid=23177499 polypeptide=Lus10025734 locus=Lus10025734.g ID=Lus10025734.BGIv1.0 annot-version=v1.0
ATGGGGCTATCGGAGCAAGGACGGGTTTGCAAGAAGCACCGATCCCATGAAGAAAAGCACGGTGTTTGCGCATCCTGTCTCAGGTACCGCCTCTCCCAGC
TCGATGACCACCATAGCAGAGATAAAGCAGCTTCTTCTTCTTCCTATTCCTCTGCTTCCTTATCATCTTCAACCTCCTGCCGCTCTGATTACGAATCTGC
TGAAACCCACCACAACCAAGGGATGCTGAAAGAGAAGAAGAAGAACAACAAGAAGCGCGTGGTCCGCACGCACCATCGCAGCGCTTCGTCTACGGAGATA
GGGTCGATATCGTTCACCGCTGAGGCGGCCGTGCCTGCTATCAGCGGCGGAGGTGGGGTCCCCAATGGGTTAAAGAAGAGCAGATCCGTAGCGGCGTCGT
ATTCGTTCGCACCTCAGCCTGCGAGAGCCATGAGCTACTGCGTTGGGGATGATATGGGGATTAAGAACACTCATCATCATCAACAACAATATAATCTTTA
TAACAAGGGTAATAATAATAAGGGCAGCAGCGAGGGTTGTGATAATTATGGGAGTGAGAAGAAGAAGAAAGGTGGGTTTTGGTCCAAATTGCTTCATTTG
AAGGGGAAGAACAACGGCAATCACAGGGAGGTTATGATCCAGCAGCGAAGGGTGTATTAA
AA sequence
>Lus10025734 pacid=23177499 polypeptide=Lus10025734 locus=Lus10025734.g ID=Lus10025734.BGIv1.0 annot-version=v1.0
MGLSEQGRVCKKHRSHEEKHGVCASCLRYRLSQLDDHHSRDKAASSSSYSSASLSSSTSCRSDYESAETHHNQGMLKEKKKNNKKRVVRTHHRSASSTEI
GSISFTAEAAVPAISGGGGVPNGLKKSRSVAASYSFAPQPARAMSYCVGDDMGIKNTHHHQQQYNLYNKGNNNKGSSEGCDNYGSEKKKKGGFWSKLLHL
KGKNNGNHREVMIQQRRVY

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10025734
[exp]
0 1
AT4G00720 ASKTHETA, ATSK3... SHAGGY-LIKE PROTEIN KINASE THE... Lus10036568
[exp]
1.0 0.9669
AT4G24640 APPB1 Plant invertase/pectin methyle... Lus10035527
[exp]
13.6 0.9206
AT5G05320 FAD/NAD(P)-binding oxidoreduct... Lus10034838
[exp]
14.1 0.9551
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Lus10034817
[exp]
19.2 0.9536
AT1G31930 XLG3 extra-large GTP-binding protei... Lus10010421
[exp]
21.1 0.8978
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Lus10036396
[exp]
22.8 0.9535
AT5G67550 unknown protein Lus10025583
[exp]
25.8 0.9487
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Lus10021312
[exp]
31.9 0.9450
AT4G04450 WRKY ATWRKY42, WRKY4... WRKY family transcription fact... Lus10015546
[exp]
32.4 0.9516
AT3G12500 PR-3, PR3, CHI-... PATHOGENESIS-RELATED 3, basic ... Lus10028378
[exp]
32.7 0.9454

Lus10025734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.