Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65290 1004 / 0 LMBR1-like membrane protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035927 [exp] 1505 / 0 AT5G65290 1001 / 0.0 LMBR1-like membrane protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096900 [exp] 1177 / 0 AT5G65290 985 / 0.0 LMBR1-like membrane protein (.1.2) Potri.005G072100 [exp] 1156 / 0 AT5G65290 924 / 0.0 LMBR1-like membrane protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10025735 pacid=23177577 polypeptide=Lus10025735 locus=Lus10025735.g ID=Lus10025735.BGIv1.0 annot-version=v1.0 ATGTGGGTGTTTTACCTGATCTCGTTACCACTAACCCTAGGCATGGTCGTCTCGACGTTGAGATACTTCGCCGGGCCGGAGGTGCCTCGTTACGTTCTGT TCACTGTCGCTTACACATGGTTTTGTTCCCTCTCCATTATTATCCTCGTTCCCGCCGATATCTGGACGACAATGTTTGGGTTTGATAGAGGCGCCATTTC TTTCCTCTGGAGCTGGTCGTATTGGAGTACTTTCTTACTTACTTGGGCTATGGTGCCCCTTATTCAGGGTTTCGAAGATGCTGGAGACTTTACTGTGACG GAAAGACTAAAGACTAGCATTCATGCTAACTTAGTCTTCTATTTGATTGTCGGAGCTGTCGGTCTATTTGGCCTCATTCTTCTCATAATGATGGATAAGA TAAGGACTAATGGCGTGCTTGGTTTTGCCATGGCGTGCTCAAATACTTTTGGACTTGTGACGGGTGCATTTCTTCTTGGTTTTGGTTTGAGTGAGATTCC AAAAACACTGTGGAGATATGCAGATTGGATAGTACGGCAGAAAGCCCTTTCTCATAAAATTGCAAAAATGGCTGTGAAACTCGATGATGCTCATCAGGAG TTTTCAAATGCCATTGTGGTCGCTCAAGCAACATCGAATCAGATGTCCAAGCGTGATCCCTTGAGGCCCTACATGGATGTCATTGACAATATGCTTGTTC AACTGTTTAGGCAAGATCCATCTTTTAAGCCACAAGGTGGTCGACTGGGGGAAAATGATATGGACTATGACACAGATGAGAAATCAATGGCAACTCTCAG GCGACATCTTCGGCGAGCTCGAGATGAATATTATCGTTACAAGAGCGAGTATATGACATTTGTCTTGGAAGCCCTTGAGCTCGAAGATACGATTAAAAAT TATGAACGGAGACAATCAACTGGATGGAAATACTTATCCAGCTTCAGATCTGCTAGAAGTGGTAAATTCGGGTCACTTTTGGATACCATAGAATTTCTTT GGAGATGCATCCTGAGGAAGCAACTTGAGAAGCTCTTGGCTGTGTTACTTGGGACCATGTCAGCTGCAATTCTTTTAGCAGAGGCAACACTTGTAATCAC TGGTGTTGATTTGTCACTTTTTTCCATCCTTATTAAATCTGTGGGAAAACGAGAAATTTTAGTACAGGTGTCAGCTTTTGTGCCTTTGATGTATATGTGC ATCTGTACTTACTACTCATTGTTCAAGGTTGGAATGTTGATGTTCTACTCACTGACACCTAGGCAAACAAGCTCAGTCAGCTTGCTTATGATATGCTCGA TGATTGCTCGGTATGCTCCCCCAATTTCATACAACTATCTCAACCTCATTAATCTTGGCGATAGGCAAACAATGTTTGAAAAGCGTATGGGGAAGATTAA TGATGCGGTGCCCTTCTTTGGCGTTGGCTTTAATAGAATCTATCCACTTTTCATGGTTGTCTACACGCTACTGGTCGCAAGCAATTTTTTCGACCGTGTA CTAGGTTGTTTTGGGAGTTGGAAAAAGTTTGGGTTTCAAACTGAGGTAGATGATACAGATGGCTTTGATCCTTCAGGGCTAATTATCCTTCAGAAGGAAA GATCATGGCTAGAACAAGGACAGAGAGTGGGTGAGCATGTTGTCCCACTGGCAAGGAACTTTAATGGTGTGGATGTGGAGGCTGCCAACAACAATATGGA TAAGACAAGTGTTGAAATGAAGGCAACGGCGAATTTGACTAGCGATGATGGGATGGGAAGTTCATCTAGAGTTATGAAGGAAGAGAGTCGTAGGTCCAAT CCGAGCAGAGAAGCCCTGAGCAGTAAGTATGCTGCTGTTAGACAGCAGAGTAGAATTTCCAACATGAGGCCACAGGAGAAGAACATAGTCTCTGCTAAGG TGTCATTGCTTGATGCAGGCACCTCAATTTCTTCTGACAACACAAATCGAGGGAAGTCTTCGGGCCTCACTGCCAGATGGGAGTCAATGAAGAATGGTTT CCAAACTTTCAAAGCTAATATAGAGGCAAAACGATTCCTTAATCTACGTCAGATGCAGGAAACCAAGCTTGTTTCTCATGATTCATCATCACCTGACAAT CTTGACGAGATATTCCAGAGATTGAGACGACCCTCTGATGATCATGGAAGTGTAAGTGACGAGGACGATGCTGGGGATGAGATCAGAGCTCCACGGCCTA CCAGATAG
AA sequence Show only first row Show all	>Lus10025735 pacid=23177577 polypeptide=Lus10025735 locus=Lus10025735.g ID=Lus10025735.BGIv1.0 annot-version=v1.0 MWVFYLISLPLTLGMVVSTLRYFAGPEVPRYVLFTVAYTWFCSLSIIILVPADIWTTMFGFDRGAISFLWSWSYWSTFLLTWAMVPLIQGFEDAGDFTVT ERLKTSIHANLVFYLIVGAVGLFGLILLIMMDKIRTNGVLGFAMACSNTFGLVTGAFLLGFGLSEIPKTLWRYADWIVRQKALSHKIAKMAVKLDDAHQE FSNAIVVAQATSNQMSKRDPLRPYMDVIDNMLVQLFRQDPSFKPQGGRLGENDMDYDTDEKSMATLRRHLRRARDEYYRYKSEYMTFVLEALELEDTIKN YERRQSTGWKYLSSFRSARSGKFGSLLDTIEFLWRCILRKQLEKLLAVLLGTMSAAILLAEATLVITGVDLSLFSILIKSVGKREILVQVSAFVPLMYMC ICTYYSLFKVGMLMFYSLTPRQTSSVSLLMICSMIARYAPPISYNYLNLINLGDRQTMFEKRMGKINDAVPFFGVGFNRIYPLFMVVYTLLVASNFFDRV LGCFGSWKKFGFQTEVDDTDGFDPSGLIILQKERSWLEQGQRVGEHVVPLARNFNGVDVEAANNNMDKTSVEMKATANLTSDDGMGSSSRVMKEESRRSN PSREALSSKYAAVRQQSRISNMRPQEKNIVSAKVSLLDAGTSISSDNTNRGKSSGLTARWESMKNGFQTFKANIEAKRFLNLRQMQETKLVSHDSSSPDN LDEIFQRLRRPSDDHGSVSDEDDAGDEIRAPRPTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	2.4	0.9192
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	4.0	0.9092
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	5.2	0.9053
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	5.5	0.8901
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	5.7	0.9045
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	6.0	0.8661
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	7.5	0.8892
AT3G14910			unknown protein		Lus10043078 [exp]	9.5	0.8941
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	10.4	0.8676
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	10.4	0.8596

Compare expression of checked genes

Lus10025735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.