Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65280 543 / 0 GCL1 GCR2-like 1 (.1) AT1G52920 316 / 3e-104 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 312 / 8e-103 GCL2 GCR2-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035926 [exp] 796 / 0 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10020719 [exp] 350 / 7e-118 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10033701 [exp] 316 / 5e-104 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10031638 [exp] 126 / 6e-32 AT2G20770 238 / 3e-76 GCR2-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072500 [exp] 584 / 0 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 576 / 0 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.001G403200 [exp] 343 / 6e-115 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.013G134700 [exp] 311 / 3e-102 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.011G122300 [exp] 108 / 1e-27 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF05147 [flax] [poplar] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Lus10025736 pacid=23177582 polypeptide=Lus10025736 locus=Lus10025736.g ID=Lus10025736.BGIv1.0 annot-version=v1.0 ATGGGCACTAAAACTGCCACCAATATGAATATCCCCCCTTGTCAAGGATACAAAAAATCCTCATCTTCCTCCTCCTCCTCCTCCACCGGCGATGGTGATC AGGCGATGGCCAATCGCCTTCCTCTACCACAGCAACTGCAACTGCCCTTTGATCTCACTACTGTTTTGGCTCTCCCTTCCCACAATTTCCTCGCTGCCGC CCTTTCTCTCAAACACCAGGTGGTGGACGCGACTTGGGGAGGCGGAGAAGGTTGTTTGAGCTCCGACCCGACCCTATACACCGGTTTGCTAGGCACCGCT TTCACCTGTCTGCGTTCTTACCAGGTCACCGCCGACCCACTCGACTTGGATCTCTGCTCCCACATTGTAGACGCTTGTGCCGCCGCTCCTGCTCCCTCCC TCAGGCACGTGACATTTATATGCGGCAGAGGAGGAATATACGCCATAGGTGCGGTAGTTGCCAGCTACAAAGGGGACCATCGCAGACGTGACTTCTTCTT GAACATGTTCCTCAAGACGGCTGAAGAGCCTGCTCTGCCAATCGGGCCCGAGGAAGGTGGCTTTGGAATGTCCTACGAGTTGATGTACGGCCGAGCCGGC TTCCTATGGGCCGCTCTCTTCATCAACAAGCACCTTGGTGAAGGCACACTCCCATTTGACCTTGTGCGACCCGTGGTGGATGCGGTGCTGGAAGGCGGCA GGGCAGGCGCACCTGACAACACTGCCTGCCCGCTCATGTATCGGTGGCACGGAACTAGGTACTGGGGAGCAGCGAGTGGCTTTGCGGGGATCCTCCACGT CCTGCTTCACTTCCCACTCAGCGAGCAGGATGCGGAGGATGTGAAGGCCACTTTAAGGTACATGATGAGTAAAAGGTTCCCGGATAGTGGGAATTACCCT TCGAGTGAAGGGAATCCTAGGGACAGCTTTGTTCAATGGTCCCATGGCGCGACAGGCATGGCAATCACGCTGTGCAAAGCGTCTGAGGTGTTTCCGGAAG AGGGGGATTTCAGGGACGCTGCCATAGAGGCAGGGGAAGTGGTGTGGAAGAGCGGGGCGGTGGGGAAGAAGGCCGGACTTGCGGATGGTGTGGCTGGAAA TGCGTATGCGTTTCTTTCTCTCTATCGTCTTACTGGGGACAGGGTCTATGAAGAACGTGCAAAGGCATTTGCGGGATACTTGTATCGTAACGTGACGAGT ACGAGTAATAGTGGTTCGAATGAGGTAGTTGGGTTTTTGAATGATGATGGAAGCTGGTCTCTTTTCCAAGGGCTAGCTGGGATTGCTTGCCTTTGGTTCG ATGTGCTTGCCCCTCAAAATGCTCGATTCCCTGGATATGAATTGTAA
AA sequence Show only first row Show all	>Lus10025736 pacid=23177582 polypeptide=Lus10025736 locus=Lus10025736.g ID=Lus10025736.BGIv1.0 annot-version=v1.0 MGTKTATNMNIPPCQGYKKSSSSSSSSSTGDGDQAMANRLPLPQQLQLPFDLTTVLALPSHNFLAAALSLKHQVVDATWGGGEGCLSSDPTLYTGLLGTA FTCLRSYQVTADPLDLDLCSHIVDACAAAPAPSLRHVTFICGRGGIYAIGAVVASYKGDHRRRDFFLNMFLKTAEEPALPIGPEEGGFGMSYELMYGRAG FLWAALFINKHLGEGTLPFDLVRPVVDAVLEGGRAGAPDNTACPLMYRWHGTRYWGAASGFAGILHVLLHFPLSEQDAEDVKATLRYMMSKRFPDSGNYP SSEGNPRDSFVQWSHGATGMAITLCKASEVFPEEGDFRDAAIEAGEVVWKSGAVGKKAGLADGVAGNAYAFLSLYRLTGDRVYEERAKAFAGYLYRNVTS TSNSGSNEVVGFLNDDGSWSLFQGLAGIACLWFDVLAPQNARFPGYEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	0	1
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	1.0	0.9122
					Lus10034724 [exp]	3.5	0.8474
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	3.6	0.8128
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	5.8	0.8596
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	6.7	0.8289
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	12.0	0.8055
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	12.4	0.8009
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	13.2	0.7868
					Lus10035688 [exp]	14.0	0.8347
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	15.2	0.8141

Compare expression of checked genes

Lus10025736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.