Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22420 270 / 2e-91 Peroxidase superfamily protein (.1) AT5G19890 138 / 5e-40 Peroxidase superfamily protein (.1) AT2G18140 134 / 3e-38 Peroxidase superfamily protein (.1) AT2G18150 134 / 4e-38 Peroxidase superfamily protein (.1) AT4G36430 132 / 7e-38 Peroxidase superfamily protein (.1) AT2G38390 131 / 3e-37 Peroxidase superfamily protein (.1) AT5G66390 130 / 9e-37 Peroxidase superfamily protein (.1) AT2G38380 128 / 8e-36 Peroxidase superfamily protein (.1) AT5G06730 127 / 2e-35 Peroxidase superfamily protein (.1) AT5G06720 126 / 2e-35 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035925 [exp] 356 / 1e-125 AT2G22420 418 / 1e-147 Peroxidase superfamily protein (.1) Lus10026748 [exp] 128 / 6e-36 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10008168 [exp] 126 / 4e-35 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10041784 [exp] 124 / 2e-34 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 123 / 7e-34 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10027989 [exp] 123 / 9e-34 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10025535 [exp] 124 / 1e-33 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10008174 [exp] 120 / 8e-33 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10008167 [exp] 120 / 1e-32 AT5G06720 399 / 3e-139 peroxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096200 [exp] 263 / 1e-88 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.005G072800 [exp] 257 / 2e-86 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 137 / 1e-39 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 136 / 3e-39 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 132 / 2e-37 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214800 [exp] 129 / 3e-36 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 129 / 4e-36 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214900 [exp] 127 / 9e-36 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 127 / 1e-35 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.002G031200 [exp] 125 / 9e-35 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10025737 pacid=23177517 polypeptide=Lus10025737 locus=Lus10025737.g ID=Lus10025737.BGIv1.0 annot-version=v1.0 ATGGCCTCCCGTGACGCTGTTTCCCTCACGGGTGGGCCCCAGTGGGAAGTGAAGCTGGGGAGGCTGGACAGTCTGACGGCGAGCCAGGCCGACGCCGACG CAATCATGCCAAGCCCGAGAGCCAACGCCACGATGCTGATCGACCTCTTCGAGAGATTCAACCTCTCGCTCTACAACCAGTCCGGGTCGGGCCGACCCGA CCCTGCGATTGAGCCAGGGTACAGGCAGAAGCTGATGGAGCTTTGTCCGATGGGGGGAGACGAGAACGTGACGGTGGGTTTGGATTCGACTCCGCTTGTG TTCGACAACGTGTATTTCAAGGATTTGGTGGGCGGGAGAGGGTTCTTGAACTCCGACGAAACGCTCTTCACTTATCCAATCACCAGGAAGTACGTGCAGG AGTTCGGCCGGGATCAGGATGCGTTTTTTGAGGCGTTTGCGGAAGGGATGATTAAGATGGGTGACTTGCAGTCTGGGCTGCCAGGTGAAGTCAGGAGGAA CTGCCGGGTTGCTAATGGCGGCCGGCGGCAGGTCAGCAATCGATTGAGCAGCTTCAGTTAA
AA sequence Show only first row Show all	>Lus10025737 pacid=23177517 polypeptide=Lus10025737 locus=Lus10025737.g ID=Lus10025737.BGIv1.0 annot-version=v1.0 MASRDAVSLTGGPQWEVKLGRLDSLTASQADADAIMPSPRANATMLIDLFERFNLSLYNQSGSGRPDPAIEPGYRQKLMELCPMGGDENVTVGLDSTPLV FDNVYFKDLVGGRGFLNSDETLFTYPITRKYVQEFGRDQDAFFEAFAEGMIKMGDLQSGLPGEVRRNCRVANGGRRQVSNRLSSFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	0	1
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	1.7	0.8486
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	2.0	0.8456
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	2.4	0.8301
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	6.3	0.8277
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	6.3	0.8253
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	6.3	0.7849
AT1G80940			unknown protein		Lus10041624 [exp]	9.8	0.8154
AT1G80940			unknown protein		Lus10024095 [exp]	11.0	0.7776
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	11.6	0.7847
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	12.4	0.8054

Compare expression of checked genes

Lus10025737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.