Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65270 404 / 4e-145 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 360 / 4e-128 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT3G12160 343 / 2e-121 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 319 / 1e-111 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT1G09630 279 / 7e-96 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G07410 271 / 4e-93 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G18800 268 / 8e-92 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT1G06400 264 / 4e-90 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT3G15060 262 / 3e-89 AtRABA1g RAB GTPase homolog A1G (.1) AT1G16920 262 / 3e-89 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035924 [exp] 461 / 1e-167 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 426 / 5e-154 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 425 / 2e-153 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10016284 [exp] 323 / 3e-113 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 319 / 8e-112 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 305 / 6e-104 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 309 / 5e-103 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014732 [exp] 290 / 4e-100 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10002725 [exp] 288 / 2e-99 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096000 [exp] 395 / 8e-142 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 394 / 3e-141 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.001G270100 [exp] 329 / 1e-115 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 323 / 3e-113 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 322 / 4e-113 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.003G004100 [exp] 280 / 3e-96 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 273 / 1e-93 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.014G102200 [exp] 273 / 2e-93 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.006G000300 [exp] 270 / 3e-92 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.002G175700 [exp] 268 / 1e-91 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025738 pacid=23177534 polypeptide=Lus10025738 locus=Lus10025738.g ID=Lus10025738.BGIv1.0 annot-version=v1.0 ATGGCTGGGTATGGAGATCCTAGTCAGAAAGTGGATTATGTCTTTAAGGTGGTCCTGATTGGAGACTCGGCGGTGGGGAAGTCTCAGATACTTGCTAGAT TTTCGAGGAATGAGTTCAGTCTCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACACGGACTATGGTTATACAGCACAAGAGCGTCAAGGCTCAGAT CTGGGATACCGCCGGCCAAGAACGATACAGAGCGGTTACAAGTGCTTATTACAGAGGTGCGGTAGGGGCGATGTTGGTGTACGACATAACCAAGCGCCAG ACCTTTGATCACATTCCGCGCTGGCTGGAAGAGTTACGTGGTCATGCTGACAAGAATATTGTTATCATTCTGGTAGGGAACAAGTGTGATCTTGAGGAAC AGAGAGGAGTACCCACAGAGGATGCCAAGGAATTTGCAGAGAAGGAGGGTTTGTTCTTCCTAGAAACCTCCGCATTGAACGCCATCAATGTGGAGAGTGC CTTTTCAACGGTATTGACGGAGATATTCAACATTGTAAACAAAAAGAGCTTGACAGCTGATGAGAATCAAGGCAACGGTAACACTGCGTCATTAGCTGGT AAGAAAATCCTGGTGCCAGGCCCTGCACAAGTAATTCCAGCAAAGAGAAACATGTGTTGCACCTCATCGTGA
AA sequence Show only first row Show all	>Lus10025738 pacid=23177534 polypeptide=Lus10025738 locus=Lus10025738.g ID=Lus10025738.BGIv1.0 annot-version=v1.0 MAGYGDPSQKVDYVFKVVLIGDSAVGKSQILARFSRNEFSLDSKATIGVEFQTRTMVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ TFDHIPRWLEELRGHADKNIVIILVGNKCDLEEQRGVPTEDAKEFAEKEGLFFLETSALNAINVESAFSTVLTEIFNIVNKKSLTADENQGNGNTASLAG KKILVPGPAQVIPAKRNMCCTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	0	1
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	1.4	0.7938
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	2.0	0.7830
AT5G51840			unknown protein		Lus10031667 [exp]	6.2	0.7085
AT2G01818			PLATZ transcription factor fam...		Lus10013242 [exp]	8.4	0.6783
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	10.2	0.7359
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	14.0	0.7393
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	14.9	0.7486
AT1G77350			unknown protein		Lus10028559 [exp]	19.8	0.7301
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	22.4	0.7095
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	23.3	0.7011

Compare expression of checked genes

Lus10025738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.