Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22410 842 / 0 Class-II DAHP synthetase family protein (.1) AT4G39980 842 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) AT4G33510 812 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035923 [exp] 941 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1) Lus10000636 [exp] 909 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 905 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10001002 [exp] 783 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 644 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073300 [exp] 880 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.005G162800 [exp] 860 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.002G099200 [exp] 857 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 807 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.001G150500 [exp] 796 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10025739 pacid=23177561 polypeptide=Lus10025739 locus=Lus10025739.g ID=Lus10025739.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCTCCTTTTCCACACACAACAACCACCACCAACAACAACCCCCCCACTTGTCCCTCTGGAACAAGAATGCCACCGCTTCCAGATCCAACC TCCCTTCAATCTCCGCTGTCCACGCCGCCGAGCCCACCAAGAGCTCTGTCCCCGCCGCCGCCGCCGCCGTCGTCCCTCCTCCTTCTCCTGTTTCCTCCGG TGGAAAGTGGAGTCTGGAGAGCTGGAAGACGAAGAAGGCATTGCAGCTACCTGAGTACCCCAACGCCAACGAGCTCAACGATGTCCTGAAAACCATTGAA GAGTTCCCGCCCTTGGTGTTCGCCGGGGAAGCCAGGAGTCTGGAAGAGAAATTGGGGGATGCTGCTTTTGGTAAAGCTTTCTTGTTGCAGGGAGGCGATT GTGCTGAGAGCTTCAAGGAGTTCAATGCTAATAATATCAGGGATACCTTCAGGATCTTGCTCCAGATGGGTGCTGTTCTTATGTTTGGCGGTCAAATGCC TGTTATTAAGGTGGGGAGAATGGCTGGTCAATTTGCAAAGCCTAGGTCGGATACATTTGAAGAGAAAGATGGAAAGAAGTTTCACAGCTACAAAGGGGAC AATATCAATGGGGATGCTTTTGATGAGAAGTCAAGGACTCCAGATCCACAGAGGATGATTAGAGCCTACTGCCAATCTGCTGCTACTTTGAATCTCCTCA GGGCGTTTGCCACTGGTGGGTATGCTGCGATGCAAAGGGTCACCCAGTGGAATCTTGATTTCGCAGAGCGTAGCGAGCAGGGAGACAGGTATCAGGAATT GGCTAATCGGGTTGATGAGGCCTTAGGATTTATGGCTGCTGCTGGACTGACAGTGGATCATCCCATAATGACAACAACTGAATTCTGGACTTCCCATGAG TGCTTGCTCTTGCCATATGAGCAATCACTGACAAGGTTGGATTCGACATCTGGGCTGTACTATGATTGCTCTGCTCATATGGTGTGGTGTGGAGAAAGGA CTCGTCAACTTGATGGGGCACATGTAGAGTTCCTCAGAGGAATCTCCAATCCTCTTGGAATCAAGGTTAGCCAGAAAATGGACCCAACTGAGTTGGTGAA ACTGATTGAGATCTTGAACCCTGCAAACAAACCAGGGAGGATAACAATCATATGCAGAATGGGAGCTGAAAACATGAGAGTGAAGCTTCCCCATTTGATC AGAGCTGTACGTAGGTCAGGACAAATTGTGACATGGGTTTCTGATCCCATGCATGGTAACACCATCAAGGCACCATGCGGTCTCAAAACACGCCCCTTCG ATAATATCATGGCTGAAGTTCGGGCATTCTTTGACGTGCACGAGAAAGCAGGAACGTATCCAGGAGGAATTCACCTGGAGATGACTGGGCAGAATGTGAC AGAGTGCATAGGAGGATCTCGCACTGTAACTTTCGATGACTTGAGCTCCCGCTACCACACCCACTGTGATCCAAGACTGAATGCTTCTCAATCTCTGGAG CTAGCTTTCATCATAGCCGAGCGACTGAGGAAGAGGAGGATGAGAATGTAG
AA sequence Show only first row Show all	>Lus10025739 pacid=23177561 polypeptide=Lus10025739 locus=Lus10025739.g ID=Lus10025739.BGIv1.0 annot-version=v1.0 MASLSFSTHNNHHQQQPPHLSLWNKNATASRSNLPSISAVHAAEPTKSSVPAAAAAVVPPPSPVSSGGKWSLESWKTKKALQLPEYPNANELNDVLKTIE EFPPLVFAGEARSLEEKLGDAAFGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDTFEEKDGKKFHSYKGD NINGDAFDEKSRTPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFAERSEQGDRYQELANRVDEALGFMAAAGLTVDHPIMTTTEFWTSHE CLLLPYEQSLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGISNPLGIKVSQKMDPTELVKLIEILNPANKPGRITIICRMGAENMRVKLPHLI RAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDNIMAEVRAFFDVHEKAGTYPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLE LAFIIAERLRKRRMRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	0	1
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	1.0	0.9763
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	1.7	0.9694
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	2.4	0.9734
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	2.4	0.9644
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	4.6	0.9472
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	5.2	0.9431
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	5.3	0.9668
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	6.9	0.9628
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10019841 [exp]	6.9	0.9576
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	9.2	0.9663

Compare expression of checked genes

Lus10025739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.