Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10310 98 / 2e-27 unknown protein AT4G37810 55 / 1e-10 unknown protein AT3G13898 52 / 6e-10 unknown protein AT2G30370 45 / 2e-06 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT4G14723 42 / 6e-06 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 42 / 6e-06 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035922 [exp] 163 / 1e-53 AT5G10310 100 / 2e-28 unknown protein Lus10006016 [exp] 64 / 3e-13 AT3G13898 76 / 4e-17 unknown protein Lus10008387 [exp] 62 / 3e-13 AT3G13898 76 / 9e-19 unknown protein Lus10011591 [exp] 57 / 1e-11 AT4G37810 102 / 6e-29 unknown protein Lus10007240 [exp] 49 / 4e-08 AT4G37810 75 / 2e-17 unknown protein Lus10019254 [exp] 48 / 6e-08 AT4G37810 74 / 5e-18 unknown protein Lus10028241 [exp] 47 / 7e-08 AT4G37810 74 / 2e-18 unknown protein Lus10011570 [exp] 47 / 8e-08 AT4G37810 79 / 8e-20 unknown protein Lus10006616 [exp] 40 / 1e-05 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095400 [exp] 110 / 1e-32 AT5G10310 105 / 2e-30 unknown protein Potri.005G073700 [exp] 107 / 3e-31 AT5G10310 102 / 7e-29 unknown protein Potri.002G112900 [exp] 65 / 3e-14 AT4G37810 90 / 9e-24 unknown protein Potri.003G042300 [exp] 59 / 3e-12 AT3G13898 80 / 4e-20 unknown protein Potri.018G130700 [exp] 47 / 6e-08 AT1G80133 62 / 1e-13 unknown protein Potri.008G157300 [exp] 44 / 2e-06 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 43 / 5e-06 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 39 / 0.0001 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025740 pacid=23177543 polypeptide=Lus10025740 locus=Lus10025740.g ID=Lus10025740.BGIv1.0 annot-version=v1.0 ATGAACCTCCATTTCACATTCTTCTTCTTCTTCTTCTTCTGTTGTTGTGTGTTTCAGATTGTTGAAGGTGCGCTGTTAGTTGAGGAGAAGATAAGGTTGG GATCAACACCACCAAGCTGTCACAATAAGTGCAATAGCTGCCATCCCTGCATGGCGGTCCAAGTCCCCACTATGCCGAGTCACAGCCGAGTCCAACCGGG TTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGAGTTGTTTGAGTCGTACGATAATCCGCCAGATGGGAACAGGTACTCCAACTACAAGCCAATCGGCTGG AAGTGTCGCTGTGGTAACCACTTCTACAACCCTTAG
AA sequence Show only first row Show all	>Lus10025740 pacid=23177543 polypeptide=Lus10025740 locus=Lus10025740.g ID=Lus10025740.BGIv1.0 annot-version=v1.0 MNLHFTFFFFFFFCCCVFQIVEGALLVEEKIRLGSTPPSCHNKCNSCHPCMAVQVPTMPSHSRVQPGSSSSSSSSSSELFESYDNPPDGNRYSNYKPIGW KCRCGNHFYNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10310			unknown protein		Lus10025740 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	1.4	0.8507
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	1.4	0.8814
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	3.0	0.8054
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	4.9	0.8260
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	5.0	0.8212
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	6.5	0.8021
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	6.9	0.8192
AT4G37810			unknown protein		Lus10011591 [exp]	6.9	0.7998
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	11.0	0.8049
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	13.0	0.7994

Compare expression of checked genes

Lus10025740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.