Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 525 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 516 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 511 / 3e-179 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 509 / 1e-178 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 508 / 6e-178 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 487 / 7e-170 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59580 263 / 1e-82 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT5G59590 262 / 2e-82 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G11340 259 / 3e-81 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 255 / 4e-79 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035903 [exp] 714 / 0 AT1G22360 522 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024583 [exp] 535 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 534 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 527 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 512 / 2e-179 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 501 / 2e-175 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 498 / 6e-174 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10007421 [exp] 484 / 2e-168 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 483 / 4e-168 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095000 [exp] 613 / 0 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 577 / 0 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 577 / 0 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052166 [exp] 550 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 547 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 546 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 540 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 538 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 526 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 523 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025741 pacid=23177450 polypeptide=Lus10025741 locus=Lus10025741.g ID=Lus10025741.BGIv1.0 annot-version=v1.0 ATGAGTGAGTCAATTACAAAAGAGCAGCAGCAGCCACATGCAGTGTTGTTCCCATTCCCAGCACAAGGCCATATAAACCCCTTTATGCAACTCGCCAAGC TCTTCCATTCCAAGGGTTTCCACATCACATTCGTCAACACAGAGCATAACCAGAGGCGGCTTGTTAGGAGCAGAGGCAGTCAAGCTGTGAAGGGTCTCTC TGATTTCCAGTTCCACACAGTTCCTGATGGGTTGCCTCCCTCGGATAAGGATGCCACTCAAGACCCCCCCACCATTTCTTACGCTATCAAGAACAATTGC CTTCAACCATTCGTGGAGCTTGTTAATAAGCTAAGCTCATCTCCTCAACTCCCTCCTGTTACTTGTATCGTCACCGATGGAGTCATGACCTTTGGGATTC AAGCTGCTGAATTATTGGGTATTCCACATGCTTCTTTCTGGACCGCCTCTGCTTGCGGTATGATGGGTTATTTGCAATTTGAGGAGCTCATAACCAGAGG CATCTTCCCTCTCAAAGATGTCAACTTCACCGATGGAACTCTTGAAAGACGTTTGGACTGGGTTACAGGGATGAGTGACATCCGTCTGAGGGATCTCCCA AGTTTTGCAACATCAACAGACGCTAAAGATGTAATGTTTCACATATTAAAATCCGAAGCTGCGAGCTGCTTGAAATCAAGTGCAATCATCTTCAACACAT TCGACGCACTGGAAGAGCAAGCGCTAGCTTCTATAAGAAAGATCTTCCCTAACAAGATGTACACCATTGGACCCCACCATTTGCTCGGAAATGAAGACGA TACAGACGATCAATCCACAAGATCCATAAGTTCAAATCTGTGGAAAGAAGACCTTAAATGTATGGACTGGCTGGACCGACAAGAACCTAAGTCGGTTGTT TACGTCAACTACGGAAGCGTGACAGTGATGTCGGAGGAACATATAAAGGAATTTGCTTGGGGGCTTGCAAACAGCAACGTTCCTTTCTTATGGATTGTGA GAGGGGATATTGTGATAGGGGAATCTGGGTCTTTTTTACCAGCAGAGTTTCTTGAAGAAATCAAGGATAGAGGGTATCTAGCTAGTTGGTGCATGCAGCA GCAAGTGCTATCGCATCCATCCGTTGCGGTGTTCTTAACACACTGCGGTTGGAATTCGACGATGGAGAGTGTGTCGGCTGGTGTGCCGATGATATGTTGG CCCTTTTTCGCAGAGCAGCAGACTAACTGCAGATTTGCTTGCAATGAATGGGAGATTGGCATTGAGCTGAGTCATGATGTGAAGAGGAATGAAGTTGCGG ATGTGATTCATGAGGTGATGGATGGACAGAAAGGGGAAATGATGAAACGTAAGGCTTCGGAATGGCAATTGAAAGCAAGGGAAGCTGTTGGGGTCCAAGG ATCATCATTCACTAATTTCACAAGTTTTCTTCAACATCATATGTAA
AA sequence Show only first row Show all	>Lus10025741 pacid=23177450 polypeptide=Lus10025741 locus=Lus10025741.g ID=Lus10025741.BGIv1.0 annot-version=v1.0 MSESITKEQQQPHAVLFPFPAQGHINPFMQLAKLFHSKGFHITFVNTEHNQRRLVRSRGSQAVKGLSDFQFHTVPDGLPPSDKDATQDPPTISYAIKNNC LQPFVELVNKLSSSPQLPPVTCIVTDGVMTFGIQAAELLGIPHASFWTASACGMMGYLQFEELITRGIFPLKDVNFTDGTLERRLDWVTGMSDIRLRDLP SFATSTDAKDVMFHILKSEAASCLKSSAIIFNTFDALEEQALASIRKIFPNKMYTIGPHHLLGNEDDTDDQSTRSISSNLWKEDLKCMDWLDRQEPKSVV YVNYGSVTVMSEEHIKEFAWGLANSNVPFLWIVRGDIVIGESGSFLPAEFLEEIKDRGYLASWCMQQQVLSHPSVAVFLTHCGWNSTMESVSAGVPMICW PFFAEQQTNCRFACNEWEIGIELSHDVKRNEVADVIHEVMDGQKGEMMKRKASEWQLKAREAVGVQGSSFTNFTSFLQHHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	2.0	0.9330
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	2.6	0.9517
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	6.7	0.9198
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	6.8	0.9484
AT2G17705			unknown protein		Lus10025950 [exp]	8.0	0.9221
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	11.4	0.9383
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	13.4	0.8945
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	14.5	0.9241
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	16.2	0.9079
AT3G52105			unknown protein		Lus10016415 [exp]	18.4	0.9113

Compare expression of checked genes

Lus10025741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.