Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22360 484 / 4e-171 DNAJ heat shock family protein (.1) AT4G39960 473 / 1e-166 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 273 / 1e-87 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 228 / 4e-70 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 149 / 1e-40 GFA2 gametophytic factor 2 (.1) AT1G28210 120 / 3e-30 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 100 / 2e-23 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 96 / 8e-22 ATJ3 DNAJ homologue 3 (.1.2) AT2G20560 65 / 2e-11 DNAJ heat shock family protein (.1) AT5G01390 63 / 4e-11 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035920 [exp] 594 / 0 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 499 / 6e-177 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 498 / 1e-176 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 283 / 1e-91 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 283 / 2e-91 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 201 / 8e-60 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031336 [exp] 201 / 9e-60 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10027634 [exp] 151 / 2e-41 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 146 / 7e-40 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094900 [exp] 520 / 0 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 516 / 0 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 282 / 3e-91 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 215 / 7e-65 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.001G271300 [exp] 160 / 4e-45 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 158 / 3e-44 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.005G160200 [exp] 130 / 6e-34 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G015700 [exp] 93 / 9e-21 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 88 / 6e-19 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 82 / 3e-17 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025742 pacid=23177538 polypeptide=Lus10025742 locus=Lus10025742.g ID=Lus10025742.BGIv1.0 annot-version=v1.0 ATGGCCATTAGTCCCTGTGGAAGTACATCCCTTGCTCAATGGGGAACACATCCTCAAGTTATTCCGAGGTCATACATGACAAACAGAATAGTCAGCTGCC AATATAGTTCGATATGGACTACCACTGATTATGGAACTAAGTGTCAAGTTGTACCGCAGGTCTTGTCCGATGATGAGAAGCGATCATTATATGACAGATA CGGGGAGGCTGGTGTGAAAGGTGCTGGCATGGGATCATCGGATTTCAGCAACCCTTTCGATTTGTTCGAGTCTTTGTTTGACATGGGAAACATAAACATG GGTGGGATGGGAGGCCGGGCTTCAAGGAACGCAGGGGTAGATGGCCAAGATGAATATTACAATCTGGTTCTAACTTTTAAAGAAGCGATATTTGGAGTTG AAAAAGAGATTGAAATAACCCGTCTCGAGAGGTGCGGTACATGTGACGGTTCAGGTGCGAAACCAGGAACAAAGCCAACCAAGTGTAGTCCATGTGGTGG ACAAGGTCAAGTTGTGTCTTCAGTTAGAACGCCATTAGGTGTCTTCCAGCAGGTGACAACATGCAACACCTGCGGCGGAACTGGGGAAACATTCAGCCCT TGCAACACATGTTCCGGTGATGGGCGTGTTCGGAAGACGAAACGGATCAGTTTGAAAGTTCCAGCTGGTGTGGACTCCGGTAGCCGTCTAAGGGTTCGTT CCGAAGGCAATGCTGGAAAGAGAGGTGGATCACTTGGTGACCTGTTTGTTATGATAGAAGTCATACCAGATCCTATCCTGAAACGGGACGACACAAACAT CTTGTACACTTGCAAAATCTCGTATGTCGATGCAATATTGGGTACTACAATTAGGGTTCCGACCGTAGATGGAGAGGTTGATCTGAAGATTCCAGCTGGG ACACAGCCAAACACCACACTAGTGATGGCAAAGAAGGGGGTGCCTGCTCTGAACAAGAGCAACATGAGAGGTGATCAGTTGGTAAGGGTACAGGTTGAGA TCCCAAAGAGATTGAGCAGCGAAGAGAGGAAGCTCATTGAAGAGCTAGCAGATCTAAGTAAAGCTAAAACAGCAACCTCCAAGAGATAA
AA sequence Show only first row Show all	>Lus10025742 pacid=23177538 polypeptide=Lus10025742 locus=Lus10025742.g ID=Lus10025742.BGIv1.0 annot-version=v1.0 MAISPCGSTSLAQWGTHPQVIPRSYMTNRIVSCQYSSIWTTTDYGTKCQVVPQVLSDDEKRSLYDRYGEAGVKGAGMGSSDFSNPFDLFESLFDMGNINM GGMGGRASRNAGVDGQDEYYNLVLTFKEAIFGVEKEIEITRLERCGTCDGSGAKPGTKPTKCSPCGGQGQVVSSVRTPLGVFQQVTTCNTCGGTGETFSP CNTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRSEGNAGKRGGSLGDLFVMIEVIPDPILKRDDTNILYTCKISYVDAILGTTIRVPTVDGEVDLKIPAG TQPNTTLVMAKKGVPALNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKAKTATSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	1.0	0.8807
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	5.9	0.8222
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	6.6	0.8443
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	7.7	0.8381
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	11.5	0.8140
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	18.4	0.7930
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	19.3	0.7238
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	20.5	0.7183
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	21.2	0.7837
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	23.4	0.8271

Compare expression of checked genes

Lus10025742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.