Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16840 283 / 3e-96 BPA1 binding partner of acd11 1 (.1.2.3) AT4G17720 285 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 203 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 195 / 2e-61 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 132 / 2e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 100 / 9e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035919 [exp] 342 / 6e-119 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 276 / 1e-92 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 276 / 1e-92 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 261 / 2e-86 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 237 / 3e-77 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 164 / 2e-48 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 166 / 5e-48 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 141 / 1e-40 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 140 / 3e-40 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 296 / 1e-100 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 272 / 2e-91 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 230 / 1e-74 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.013G055100 [exp] 182 / 2e-56 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 177 / 3e-54 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 127 / 2e-35 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 122 / 2e-33 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G070200 [exp] 59 / 2e-10 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025743 pacid=23177625 polypeptide=Lus10025743 locus=Lus10025743.g ID=Lus10025743.BGIv1.0 annot-version=v1.0 ATGTCCATGGAAAACCTTGAATTGCTAGCCGGCTGTGCGGTTGCTGTAGATTTGGTAACAGCAGTTAAAGTTGGCAATGTTTCATTGGGAGCAACAGAGC TAGACTTGAAGGAGTTCTTTTCTTTTTCTGGCGAAATTGATTGTATCATTATGCAGAGTGACACTGAGCGCTCTCAAAGTGCATACCTAAGATTCAAAGA ACCCCAGGGGGCTGAGACAGCAATCCTTCTCTCGGGAGCCACAATAGTGGATCAGTCAGTTACAATAGAATTGGCTCCAGACTACGAGTTTCCTGCAGCT GCTCAAGTCTCTTCTAATACAATGGAGAACAATGGAGGTGCTAGCGCTGAATCAGCTATCCAAAAGGCCGAAGATGTTGTCAGTGGCATGCTGGCCAAAG GATTCTGCCTGGGGAAGGATGCACTCAAGAAAGCCAAGACCTTCGATGAGAAGCTCCAACTGACTTCAACAGCATCGTCCAAGGTTGCTTATCTGGATCA AAAGATTGGTCTGACTGACAAAATCAGTGCAGGGACAAGCGTTGTGAATGAGAAAGTAAGGGAGATGGATGAGAAGTTGAAGGTGTCAGAGGCAGCCAAG GCCGCTTTAACAGCTGCTGAGCATTCAGTCAGCACTGCAGGGTCAGCGATCATGAAGAACCGTTATGTACTGACAGGGGCTTCGTGGGTTACTGGTGCAT TTGGTCGGGTGAGCAAGGTAGCAGGTGAGGTGACGCAGAAGACAAAGGACAAGGTTTTGGCTGAGGAACAAGGAGCCAATAAGGCTGTAGGCTACGTTCC AATTAATGACTCGTGCGCATACAAATGGGGACTTTGA
AA sequence Show only first row Show all	>Lus10025743 pacid=23177625 polypeptide=Lus10025743 locus=Lus10025743.g ID=Lus10025743.BGIv1.0 annot-version=v1.0 MSMENLELLAGCAVAVDLVTAVKVGNVSLGATELDLKEFFSFSGEIDCIIMQSDTERSQSAYLRFKEPQGAETAILLSGATIVDQSVTIELAPDYEFPAA AQVSSNTMENNGGASAESAIQKAEDVVSGMLAKGFCLGKDALKKAKTFDEKLQLTSTASSKVAYLDQKIGLTDKISAGTSVVNEKVREMDEKLKVSEAAK AALTAAEHSVSTAGSAIMKNRYVLTGASWVTGAFGRVSKVAGEVTQKTKDKVLAEEQGANKAVGYVPINDSCAYKWGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	0	1
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	2.2	0.9196
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	3.5	0.9286
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	6.0	0.9224
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	6.1	0.8921
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	6.5	0.9143
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	8.7	0.9214
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	9.1	0.9273
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	9.4	0.9136
AT3G62140			unknown protein		Lus10038035 [exp]	11.4	0.9053
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	11.4	0.8899

Compare expression of checked genes

Lus10025743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.