Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37820 208 / 5e-66 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 202 / 2e-63 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT5G37810 201 / 2e-63 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G19030 197 / 6e-62 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT2G34390 182 / 4e-56 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G31885 180 / 8e-55 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT1G80760 175 / 7e-53 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 168 / 3e-50 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 122 / 5e-33 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G47440 98 / 6e-24 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035918 [exp] 555 / 0 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10020929 [exp] 223 / 1e-71 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10029274 [exp] 195 / 3e-61 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 186 / 7e-58 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 180 / 8e-55 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10017358 [exp] 165 / 5e-49 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10010153 [exp] 164 / 7e-49 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 164 / 9e-49 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10007322 [exp] 158 / 8e-48 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097000 [exp] 239 / 2e-78 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 210 / 7e-67 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 205 / 7e-65 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 200 / 3e-63 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 189 / 2e-58 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 178 / 1e-54 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 174 / 1e-52 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 172 / 9e-52 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 164 / 8e-49 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 164 / 9e-49 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10025744 pacid=23177470 polypeptide=Lus10025744 locus=Lus10025744.g ID=Lus10025744.BGIv1.0 annot-version=v1.0 ATGGGTCATAATCGTCATCAGATTCCTCTGTCAAGTGGGGAATGCTCATCAAAAGCATCAATCGGGACTGAACCACAATCCTTCATCGAAGAAGGGAGAA AGGCAGGTATGAATAATATAGCTGTTATTTCACAGGTTACATCATCCACAGTAGACGATATTAGCTCTGCTTCTACAATCCATGCTCATAAGATAATTGC AGAGCTGGTTGGGAGCTACGTGATAATACTAATAGGGTGTGCTTCAATAATGGTGAAGAAGAAAGGGGAGATATCAATGGTGGGAGTGGGTGCAGCTTGG GGACTGGCATTGATGGTCATGATCTATACTCTGGGTCACATCTCTGGCGCCCATTTCAACCCTGCCGTAACCATAGCTCTTGCTTCCTCGTGCCGCTTCT CATGGAAACAGGTACCAGGATATGTGGGAGCTCAGGTGGGAGGGTCAGTACTAGCGGTGTTAAATCTGAAGGTGTTGTTCAACCATGAACATGTGGATAT AAAAGAAATGACAATCACTAAGGTTCAGGGATCGTTAACATGTTTACAAGGCCTGCTGTGGGAGTTGCTTATTTCATTCATTCTAATGCTCACCATTTGT GGAGTCGCCGTTGACACCAGAGCGGTCAACGAGCTGTCTGGGATCAGCATTGGAGCTGCGGTCCTTTTCAATGTAATGATTGCCGGGAATATGACGGGAG CATCGATGAACCCAGCGAGAAGCATAGGGGCAGCACTAGTGAACAGAGAATTTGAGAATATATGGATATACGTTGTTGGTCCAGTGGTTGGTATGCTAAC AGCTACAGCCATTTACAATGTTCTATTGACTCACGGCGAGCACAAAAAGGGTGTTACCGACGCTAAAGAGCGCGTCTGA
AA sequence Show only first row Show all	>Lus10025744 pacid=23177470 polypeptide=Lus10025744 locus=Lus10025744.g ID=Lus10025744.BGIv1.0 annot-version=v1.0 MGHNRHQIPLSSGECSSKASIGTEPQSFIEEGRKAGMNNIAVISQVTSSTVDDISSASTIHAHKIIAELVGSYVIILIGCASIMVKKKGEISMVGVGAAW GLALMVMIYTLGHISGAHFNPAVTIALASSCRFSWKQVPGYVGAQVGGSVLAVLNLKVLFNHEHVDIKEMTITKVQGSLTCLQGLLWELLISFILMLTIC GVAVDTRAVNELSGISIGAAVLFNVMIAGNMTGASMNPARSIGAALVNREFENIWIYVVGPVVGMLTATAIYNVLLTHGEHKKGVTDAKERV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	0	1
					Lus10008385 [exp]	10.2	0.8861
AT1G49230			RING/U-box superfamily protein...		Lus10006786 [exp]	10.3	0.7788
					Lus10029652 [exp]	14.7	0.8782
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	16.3	0.8780
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	21.1	0.8749
					Lus10029617 [exp]	21.7	0.8741
					Lus10016386 [exp]	23.1	0.6608
AT1G53200			unknown protein		Lus10011648 [exp]	23.7	0.7717
AT1G60970			SNARE-like superfamily protein...		Lus10025383 [exp]	25.0	0.8113
					Lus10027689 [exp]	26.6	0.8599

Compare expression of checked genes

Lus10025744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.