Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80230 119 / 1e-34 Rubredoxin-like superfamily protein (.1) AT3G15640 114 / 1e-32 Rubredoxin-like superfamily protein (.1.2) AT1G52710 79 / 4e-20 Rubredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035917 [exp] 192 / 8e-64 AT1G80230 187 / 2e-61 Rubredoxin-like superfamily protein (.1) Lus10011494 [exp] 120 / 7e-36 AT1G80230 148 / 5e-47 Rubredoxin-like superfamily protein (.1) Lus10023135 [exp] 66 / 2e-14 AT1G80230 90 / 9e-24 Rubredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173800 [exp] 133 / 3e-40 AT1G80230 162 / 2e-51 Rubredoxin-like superfamily protein (.1) Potri.003G060100 [exp] 129 / 1e-38 AT1G80230 167 / 2e-53 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF01215 [flax] [poplar] COX5B Cytochrome c oxidase subunit Vb
Representative CDS sequence Show only first row Show all	>Lus10025745 pacid=23177584 polypeptide=Lus10025745 locus=Lus10025745.g ID=Lus10025745.BGIv1.0 annot-version=v1.0 ATGTGGAGAAGAACAATTTGTTCCCATCTCAAAACCCTAGCAGCCACCGGCGCAGCCTCCTCGTCTGTGTCCTCCAGGTTGCCTACCGCCAACAGATCCT TAATATCCCCATCGGTCTCTTCTTCTCTATTCAACCGCTATTTCAGTGCCGGCGAAGATGGTGCATTGAAAAAGAGGGTTGAGGATGTGGTGCCGATTGC CACTGGCCATGAACGTGAAGAACTGGAAGCTGAATTGCAGGAGGAACCTGCTGTCATCAAGTCTTACTATGACAGGAGGATCGTTGGATGCCCTGGTGGT GAAGAAGAGGATGAGCATGATGTTGTGTGGTTTTGGTTGGAGAAAGGCAAGCATGTTGAATGCCCTGTATGCTCACAGTACTTTGTGCTTGAAGTTGTTG GCCCTGGAGGAGACCCTGAGGCTGGACATGGTGATGAGCATCATCACTGA
AA sequence Show only first row Show all	>Lus10025745 pacid=23177584 polypeptide=Lus10025745 locus=Lus10025745.g ID=Lus10025745.BGIv1.0 annot-version=v1.0 MWRRTICSHLKTLAATGAASSSVSSRLPTANRSLISPSVSSSLFNRYFSAGEDGALKKRVEDVVPIATGHEREELEAELQEEPAVIKSYYDRRIVGCPGG EEEDEHDVVWFWLEKGKHVECPVCSQYFVLEVVGPGGDPEAGHGDEHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80230			Rubredoxin-like superfamily pr...		Lus10025745 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	3.5	0.7848
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	9.5	0.7842
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	12.2	0.7341
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	17.7	0.7421
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	18.6	0.7355
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	18.8	0.7393
AT2G14045			unknown protein		Lus10042548 [exp]	20.5	0.6986
AT1G70780			unknown protein		Lus10035084 [exp]	25.0	0.7081
AT1G13380			Protein of unknown function (D...		Lus10034324 [exp]	30.4	0.7130
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	34.4	0.7131

Compare expression of checked genes

Lus10025745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.