Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15320 177 / 4e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035916 [exp] 525 / 0 AT1G15320 195 / 4e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202300 [exp] 238 / 6e-78 AT1G15320 203 / 3e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025746 pacid=23177664 polypeptide=Lus10025746 locus=Lus10025746.g ID=Lus10025746.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCAGCGCCGCAATTCCTCTGGAATGCCTATGACGAGAATGACTGTGGGAGAGGGAAAGGAGAAAGAAGATTGAGAACGAAAGGCAGAAAGG GAGATGCTGTTGATGATCGTGATGGAACCCAAGTTGTGCAATGCATGATAATCTTCAACAAGCAAGACAACACACATCGGAGAGAAGGGTACTGGGGGAA GTATGGCCTTAGGAGACAGGAGCAGAAAACTAGAGCAGCAAGGCTTCAGAAACAGCTAAAGGCAAGATGGGAGTCTGAGGAGCTGATGGAGGATCAGTTG AATTGGTTTCATGCTCACTACCGCCGCACCGTTATCCCCACAAAGTTGAATGATGTTTCTCAGCTTCTGGTGCCTAGCTCTGCGCCCCCACACGAGCTAG CCACAATGGCATGGCTTGGAGATTGGCGTCCCTCTGCAATTCTGGAACTCCTACATTGTTTGTCAAACCCAGCTTCAGGTGAAACTAACCTGTCACAACT CATCCACGAAATCCAGATCGAAGAGTCGGTGATTGATGAGGAAATGGCTGAGGTTCAGGCCAAATGTGTCCTTCATCTGCCCTTTGGTCCTCCATATAGG CAAGAAGAATCAGGGTACGCTGAGTTGAGCTGCATTGAGGCTGAGTTCAGGAAGATTCAGATTGCCATAACTAAGGCACAAGAGCTCAGGTTCAAGACGT TGGAACTGCTTGTAAAGAAGGTACTGGGGAAAACTAAGGCAGCAGAGTTCTTTGTGGTGTTTGTGAAAGTGCAAGAAGTGATCCACAATCATGCAGCAAG GCGCAAGTTACCAAAGGGTCCATGGACGATCCCGGTGAAGCACCTACCCATTAAGGGTTCCTTCTGA
AA sequence Show only first row Show all	>Lus10025746 pacid=23177664 polypeptide=Lus10025746 locus=Lus10025746.g ID=Lus10025746.BGIv1.0 annot-version=v1.0 MKKSAPQFLWNAYDENDCGRGKGERRLRTKGRKGDAVDDRDGTQVVQCMIIFNKQDNTHRREGYWGKYGLRRQEQKTRAARLQKQLKARWESEELMEDQL NWFHAHYRRTVIPTKLNDVSQLLVPSSAPPHELATMAWLGDWRPSAILELLHCLSNPASGETNLSQLIHEIQIEESVIDEEMAEVQAKCVLHLPFGPPYR QEESGYAELSCIEAEFRKIQIAITKAQELRFKTLELLVKKVLGKTKAAEFFVVFVKVQEVIHNHAARRKLPKGPWTIPVKHLPIKGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15320			unknown protein		Lus10025746 [exp]	0	1
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	1.0	0.8586
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	7.7	0.8402
					Lus10031227 [exp]	9.6	0.7961
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	10.5	0.7565
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	12.2	0.8038
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	19.8	0.7730
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	25.1	0.7728
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10017561 [exp]	28.0	0.7642
AT5G40460			unknown protein		Lus10002514 [exp]	29.9	0.7426
AT3G53220			Thioredoxin superfamily protei...		Lus10013827 [exp]	32.9	0.7636

Compare expression of checked genes

Lus10025746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.