Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15820 324 / 1e-111 ROD1 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) AT3G15830 302 / 6e-103 phosphatidic acid phosphatase-related / PAP2-related (.1) AT2G29525 42 / 0.0002 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035915 [exp] 464 / 2e-167 AT3G15820 326 / 2e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032200 [exp] 340 / 5e-118 AT3G15820 337 / 1e-116 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) Potri.001G204100 [exp] 315 / 3e-108 AT3G15820 334 / 1e-115 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025747 pacid=23177550 polypeptide=Lus10025747 locus=Lus10025747.g ID=Lus10025747.BGIv1.0 annot-version=v1.0 ATGAATGCCACACCCACCGCCGCCGTGGCAGCCACCGCCATTCCGTTGAAGCGCAAGAAAACGGATGCTGCTGCTAAAACACAGAAAAACAACCAGGGAA ATGAGGACGAACAGGAGGCAATAGTGGAGAGCGTGGCGCCGGCGTTTACGAAATGGAGGAGGAGAGATGCGATGAATGCGGTCAGGGAGCATTGGTTGCC TGTCATATTGGGAGGTGCCCTGTTGTTTTTCATGTGGGTTGAGTACACCCTCAGGATGGTCCCGACCTCCTCACAGCCCTTTGATTTAGGGTTCGTGGCC ACCCGAGCTCTCCATCGCCTTCTTTCTTCCTCGCCGGAGCTCAACTCCGTCCTCGCCGCTCTCAACACGGTGTTCGTGGGAATGCAGACAAGCTACATAT TGTGGACGTTTGTGGTGGAGGGAAGGGGGAGACCCACTATCTCTGCACTTTTCATGTTCACTTGCCGTGGAATTCTTGGCTATTCCACTCAGCTTCCTCT CCCAGAGGGATATTTGGGGTCGGGAGTGGACTTCCCAGTAGGGAACGTGTCGTTTTTCCTCTTTTTCTCGGGACACGTGGCGGGATCAGTGATAGCATCA CAGGATATGAGGAGAATGCAAAGGTGGGAGCTGGCCTTGGGATTTGAATTCCTCAACGCCTTACAAGTAGTCAGGCTACTCGCCACCAGAGGTCACTACA CCATTGATTTGGCCGCCGGTTATGCCGCCGGTCTGCTCTTTGACTCACTTGCCGGACGTTACCTCCAAACCAAGACCACCACTACTGCTGCTCTTCTTAC TACTTCCTCTCCCAGAAAATTTGTCACCAACTAG
AA sequence Show only first row Show all	>Lus10025747 pacid=23177550 polypeptide=Lus10025747 locus=Lus10025747.g ID=Lus10025747.BGIv1.0 annot-version=v1.0 MNATPTAAVAATAIPLKRKKTDAAAKTQKNNQGNEDEQEAIVESVAPAFTKWRRRDAMNAVREHWLPVILGGALLFFMWVEYTLRMVPTSSQPFDLGFVA TRALHRLLSSSPELNSVLAALNTVFVGMQTSYILWTFVVEGRGRPTISALFMFTCRGILGYSTQLPLPEGYLGSGVDFPVGNVSFFLFFSGHVAGSVIAS QDMRRMQRWELALGFEFLNALQVVRLLATRGHYTIDLAAGYAAGLLFDSLAGRYLQTKTTTTAALLTTSSPRKFVTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	0	1
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	2.0	0.8346
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	2.2	0.8495
AT2G41990			unknown protein		Lus10003341 [exp]	3.9	0.8337
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	4.5	0.8390
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	7.3	0.8369
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020805 [exp]	8.4	0.8151
AT4G33625			unknown protein		Lus10007070 [exp]	9.5	0.8197
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	12.6	0.7988
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	16.4	0.8154
					Lus10035688 [exp]	17.7	0.8322

Compare expression of checked genes

Lus10025747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.