Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47550 36 / 0.001 Cystatin/monellin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027320 [exp] 47 / 9e-08 AT5G47550 59 / 4e-12 Cystatin/monellin superfamily protein (.1) Lus10039104 [exp] 45 / 4e-07 AT5G47550 74 / 4e-18 Cystatin/monellin superfamily protein (.1) Lus10002838 [exp] 41 / 5e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G014700 [exp] 46 / 2e-07 AT5G47550 62 / 3e-13 Cystatin/monellin superfamily protein (.1) Potri.006G014500 [exp] 42 / 5e-06 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025748 pacid=23177644 polypeptide=Lus10025748 locus=Lus10025748.g ID=Lus10025748.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCTCTTCTGGCGACTTTAGCCTCATCATTTGTGACCACAATAATGGCGTTCGGGGTCCTCTTTGATCCTAGTTGGGTGCCTATCAAGGATT TGACGGACAAGAAGATTGTAGCGATCGCTGAATTCGGGGTCAAAACTTACAACAAAGCGTATCCAAACCATGAACCGTTGAAGCTTGCGAGCGTGGACAA GGGAGAAGTACTGGCTGAGCAAGCAGCAGCAGCAGCAGCAGCAGCAATACTCCCTCGTAGAACAGAGTGGGGTGTAATCCGTGGACTGAGATTATGGAAG CCCCCTGTTGTTGATACCAAGCATTAG
AA sequence Show only first row Show all	>Lus10025748 pacid=23177644 polypeptide=Lus10025748 locus=Lus10025748.g ID=Lus10025748.BGIv1.0 annot-version=v1.0 MAVALLATLASSFVTTIMAFGVLFDPSWVPIKDLTDKKIVAIAEFGVKTYNKAYPNHEPLKLASVDKGEVLAEQAAAAAAAAILPRRTEWGVIRGLRLWK PPVVDTKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025748 [exp]	0	1
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	4.9	0.8782
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	6.6	0.8678
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	7.2	0.7904
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	8.1	0.8678
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	9.4	0.8678
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020635 [exp]	9.9	0.7671
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	10.5	0.8678
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	11.5	0.8678
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	13.6	0.8546
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	14.7	0.8545

Compare expression of checked genes

Lus10025748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.