Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 408 / 9e-138 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 370 / 5e-123 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 365 / 3e-121 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 361 / 1e-119 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 350 / 3e-115 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT5G07990 337 / 4e-110 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G61040 335 / 6e-110 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 336 / 1e-109 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12300 300 / 5e-96 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 300 / 1e-95 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021136 [exp] 935 / 0 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 633 / 0 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 628 / 0 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021135 [exp] 416 / 5e-141 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10029930 [exp] 400 / 1e-134 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10028898 [exp] 371 / 2e-123 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 370 / 3e-123 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 367 / 5e-122 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 364 / 5e-121 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094700 [exp] 670 / 0 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 411 / 4e-139 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 410 / 3e-138 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 405 / 5e-137 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 405 / 1e-136 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 404 / 3e-136 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.001G113900 [exp] 390 / 4e-131 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 385 / 5e-129 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 375 / 4e-125 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 371 / 8e-124 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025749 pacid=23177483 polypeptide=Lus10025749 locus=Lus10025749.g ID=Lus10025749.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTTGACTTTTTCTCATCTTCCTCAACAAATCCCACACTGGTAATACTAATAGCAACCACAATCCCTCTCCTCCTCCTAACAAAAATCTTCC TCCGCAGCCGCGTCCGCCACGTCAGCAACTTCCCTCCGGGGCCACCGGGATGGCCGGTGATCGGCAACCTACTAGACCTCGGCAAAATGCCACACCGTAC ACTCACCCAAATGAGGAACACGTACGGCGACGTGGTCTACCTCCGACTAGGCGCGATGAAGACCATGGCCATCCTTTCGACCAAGGCGGCGTCGGAGTTC TTCAAGAACCACGACCTCGACTTCGCCGACCGGACCGTCACCGAGATCATGAAGGTCCACGGCTACGACAAAGGGTCCGTGGCACTAGCGCCTTACGGAC CCTACTGGCGCGTGCTCCGCAAACTCGTTACGGTCGACATGTTGGTGGCCAAACGGATCAACGGCAGCTACGGCGTCAGGAGGAAGTGCGTTGACAACAT GATCCGGTGGGTCGGGGAGGAGTCGGAGTCCGGATCTGAGATCGAGGTGGCGCGGTTCGTGTTCCTGACGACGTTTAACCTGCTGGGGAACTTAATGCTG TCCAAGGACTTGTTGGATTCGAAGTCCGCGGAAGGGAAGGAGTTCTTCACGGCGATGATGGGGTTGATGGAGTGGGGCGGCCATGCCAACGTGGCGGATA TTTTCCCATGGCTAAAGTCGTTGGACCCACAGGGTTTGTGCCGGAAAATGCGGAGGGATCTTGGGAAAGCTATGGAGATTGCTTCAAAGTTTGTTAACGA GAGGCTTGAAGAAGAAGAAGGTGGGAAGACTAAGAGTAAGAATGATTTCTTGGATGTGTTGCTTGAGTTTGAAGGTAATGGGAAGGATGAGCCCGAAAAG ATTTCTCACCGCGACATCAACATTTTCATACTTGAAATTTTCATGGCGGGATCGGAGACCACGAGCAGCACGACGGAGTGGGCACTAACGGAGCTCCTCC GCCACCCGGAATCAATGACCAAACTCGAAACCGAACTCAAAACCGTAATCGGGCCAAACCGGAAAGTAGAAGAGAGCGACATCGACAACCTCCCATTCCT ACAAGCAGTAGTAAAGGAAACTTTCCGATTACACCCACCGATCCCTCTCCTGGTACCCCGGCGGGCTATGCGGGACACGACTTTCATGGGCTATACAATT CCCAAAGACACCCAGGTTCTGGTCAACGCCTGGTCAATCGGGCGGGACCCGGACCAGTGGGAGGATCCGTGGAGCTTCAAACCCGAGAGGTTTTTGGACT CCAAAGTTGACTACAGGGGTCAGCATTACCAGCTCATGCCGTTCGGCGCCGGAAGGAGGATGTGCGCCGGCGTGCCGTTGGCGCACCGGGTGGTTCACTT GATACTCGGCACTCTGATTCACGAGTTTGAATGGGAGAGTAAAGTGGACCCCGGGAGTTTTGATATGGATGATAGGTTGGGGATTACGATGAGGAAGTCG GAGTCGTTGATGGTGGTGCCGAAGAAGAAGGAAAACGTGTAA
AA sequence Show only first row Show all	>Lus10025749 pacid=23177483 polypeptide=Lus10025749 locus=Lus10025749.g ID=Lus10025749.BGIv1.0 annot-version=v1.0 MAAVDFFSSSSTNPTLVILIATTIPLLLLTKIFLRSRVRHVSNFPPGPPGWPVIGNLLDLGKMPHRTLTQMRNTYGDVVYLRLGAMKTMAILSTKAASEF FKNHDLDFADRTVTEIMKVHGYDKGSVALAPYGPYWRVLRKLVTVDMLVAKRINGSYGVRRKCVDNMIRWVGEESESGSEIEVARFVFLTTFNLLGNLML SKDLLDSKSAEGKEFFTAMMGLMEWGGHANVADIFPWLKSLDPQGLCRKMRRDLGKAMEIASKFVNERLEEEEGGKTKSKNDFLDVLLEFEGNGKDEPEK ISHRDINIFILEIFMAGSETTSSTTEWALTELLRHPESMTKLETELKTVIGPNRKVEESDIDNLPFLQAVVKETFRLHPPIPLLVPRRAMRDTTFMGYTI PKDTQVLVNAWSIGRDPDQWEDPWSFKPERFLDSKVDYRGQHYQLMPFGAGRRMCAGVPLAHRVVHLILGTLIHEFEWESKVDPGSFDMDDRLGITMRKS ESLMVVPKKKENV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10025749 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	1.7	0.9482
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	2.8	0.9469
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10021490 [exp]	3.7	0.9515
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	4.5	0.9568
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	10.2	0.9430
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	14.1	0.9209
AT5G03890			unknown protein		Lus10015117 [exp]	16.3	0.9318
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	17.8	0.9374
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	19.4	0.9177
AT1G62422			unknown protein		Lus10031521 [exp]	21.0	0.9196

Compare expression of checked genes

Lus10025749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.