Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80460 743 / 0 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035914 [exp] 895 / 0 AT1G80460 845 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Lus10006975 [exp] 43 / 0.0006 AT4G30310 927 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030900 [exp] 766 / 0 AT1G80460 833 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Potri.018G095700 [exp] 42 / 0.0007 AT4G30310 989 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025750 pacid=23177487 polypeptide=Lus10025750 locus=Lus10025750.g ID=Lus10025750.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTTTCATTGGTGCGATCGATCAAGGCACAACCAGCACTAGATTCATCATCTACGATCAAAACAAGAAATGCATCGGATCTCACCAGGTCG AGTTCACTCAGTTCTACCCTGAGGCCGGATGGGTGGAACACAATCCGATGGAGATACTGGAAACCGTGAAGATTTGTATGGCTAAGGCCGTGGACAAGGC CACTGCGGATGGCCATAACGTTGACGGGAAATTGGAGGAACAATTATCAGGAGGAAGGACCCACTTCGTGGACACATGTGGGCTGCCTATTAGCACATAC TTCAGTGCACTCAAGATCCTTTGGCTGTTCGAAAACGTTGATGCTGTCAAGGGAGCTGTTAAATCTGGCGATGCTCTCTTTGGAACTATAGACACTTGGT TGATCTGGAATTTAACCGGCGGAATCCACGGTGGATTGCACGTTACCGATGTCTCCAACGCCTCCAGGACTATGCTCATGAACCTCAAGACTCTTGATTG GGACAAACCCACTTTGGAAACTCTCAAAATCCCAGCTTCCATCCTGCCCAAGATTGTCAGCAACTCTGAGGTAATTGGGAAAATTGCTAAAGGATGGCCA GTTACTGGTATACCAATTGCTGGTTGTTTGGGGGATCAACATGCTGCAATGGTTGGACAAGCTTGTAGGAAAGGTGAGGCCAAAAGCACCTATGGAACTG GTGCCTTCATACTTCTCAACACAGGGGAGGAGGTTGTTAAGTCCAACCATGGACTGCTAACCACTTTGGCTTACAAGCTTGGTCCCAAGGCACCCACAAA CTATGCTTTGGAGGGTTCAATTGCTATAGCAGGAGCTGCAGTGCAGTGGCTGAGGGACGGTCTTCGTATGATCAAGAGCGCAGCTGAGATCGAGGAATTG GCGCGGAAGGTGGACACAACGGGTGGTCTTTACTTTGTCCCTGCTTTCAACGGCCTATTTGCTCCGTGGTGGCGCGATGATGCTCGTGGTATTTTCATTG GGATCACAAGGTTCACTAATGACTCTCACGTTGCTAGAGCTGTGCTGGAAAGCATGTGTTTCCAAGTGAAGGACGTGCTGGATTCCATGCACAAAGATGC GGCTAAGAAAGATGGTGCACAAAAGGGAGAGTTCTTGCTGAGAGTAGATGGTGGTGCTACTGCCAACAGCCTTCTAATGCAGATTCAGGCAGACTTGCTA GGGAGCCCGGTGGTCAGGCCAGCTGATATTGAAACAACAGCACTGGGAGCAGCCTATGCAGCAGGTTTGGCGATTGGAGTGTGGAATGAAAGAGAGATAT TTGCATCGGGGGATAAGAGCAAAACAGACAAAACCTTCAGGCCGATACTTGAGGAGAGCGTGAGGAAGAAGAAGTTGGCGTCTTGGGGTAAAGCTGTGGA AAGAACTTTTGACTTAGCCGATCTTTATTAG
AA sequence Show only first row Show all	>Lus10025750 pacid=23177487 polypeptide=Lus10025750 locus=Lus10025750.g ID=Lus10025750.BGIv1.0 annot-version=v1.0 MAAAFIGAIDQGTTSTRFIIYDQNKKCIGSHQVEFTQFYPEAGWVEHNPMEILETVKICMAKAVDKATADGHNVDGKLEEQLSGGRTHFVDTCGLPISTY FSALKILWLFENVDAVKGAVKSGDALFGTIDTWLIWNLTGGIHGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLKIPASILPKIVSNSEVIGKIAKGWP VTGIPIAGCLGDQHAAMVGQACRKGEAKSTYGTGAFILLNTGEEVVKSNHGLLTTLAYKLGPKAPTNYALEGSIAIAGAAVQWLRDGLRMIKSAAEIEEL ARKVDTTGGLYFVPAFNGLFAPWWRDDARGIFIGITRFTNDSHVARAVLESMCFQVKDVLDSMHKDAAKKDGAQKGEFLLRVDGGATANSLLMQIQADLL GSPVVRPADIETTALGAAYAAGLAIGVWNEREIFASGDKSKTDKTFRPILEESVRKKKLASWGKAVERTFDLADLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	0	1
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	1.7	0.9805
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	2.0	0.9771
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008753 [exp]	4.0	0.9644
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	4.6	0.9762
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	5.3	0.9591
AT3G53630			unknown protein		Lus10025312 [exp]	7.1	0.9461
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	7.3	0.9683
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	7.7	0.9530
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	11.4	0.9704
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	11.5	0.9619

Compare expression of checked genes

Lus10025750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.