Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15740 587 / 0 Leucine-rich repeat family protein (.1) AT4G23840 83 / 2e-16 Leucine-rich repeat (LRR) family protein (.1) AT5G27920 61 / 2e-09 F-box family protein (.1) AT2G25490 59 / 9e-09 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 55 / 2e-07 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 54 / 2e-07 F-box/RNI-like superfamily protein (.1) AT1G80570 52 / 8e-07 RNI-like superfamily protein (.1.2.3) AT4G33210 52 / 1e-06 SLOMO SLOW MOTION, F-box family protein (.1) AT5G22320 49 / 1e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT3G58530 48 / 1e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035912 [exp] 993 / 0 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10008036 [exp] 540 / 0 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10038107 [exp] 503 / 2e-173 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10001831 [exp] 76 / 6e-14 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10029869 [exp] 69 / 3e-12 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10001264 [exp] 67 / 2e-11 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10011626 [exp] 64 / 1e-10 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10012764 [exp] 64 / 2e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012214 [exp] 64 / 3e-10 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061700 [exp] 566 / 0 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.001G092000 [exp] 81 / 1e-15 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.006G105400 [exp] 67 / 3e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G007900 [exp] 61 / 1e-09 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G022600 [exp] 61 / 2e-09 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 57 / 2e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 57 / 2e-08 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 56 / 9e-08 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 52 / 6e-07 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.018G120700 [exp] 52 / 1e-06 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025751 pacid=23177564 polypeptide=Lus10025751 locus=Lus10025751.g ID=Lus10025751.BGIv1.0 annot-version=v1.0 ATGGGTGGATTTTGTTCGACCAAGAGAGGCTATCTGGATCGCGAAGATTACAAAAATAGTCTACCGGGAAGGATTTGCAGAAAGTTCAGTAAGAACGGAA GCTCAAAATGGTTGTTGTTTACTCCAGCAGCTTCCAAGCAGCTAGTAAATGATGCCAATATCGAATGTCCTTCCCTTTTGGACCTCTGCGTCCTAAATAT CTGTAATGATATACATAAACATAATAGCTTCAGCATGCTCCCAAGGGACATCACTCAGCTGATCTTTAACCAACTGGTGTACTCTGTGCGTCTCACCGGT GCGTCACTCCAAGCATTCCACGACTGCGCCCTCCAGGATATTGATATGGCAGAATACCCGGCGGATGTTAATGACTACTGGATGGAGACTATCTCGTCTC AGGGCATGTCTTTGCTTTCCGTCGATATATCTGGGTCGGATGTTACTGATTCCGGGTTAGGTTGTCTCAAAGTCTGCAACAACTTGCAAACCCTCAATTT TGACTACTGTGACAACATTTCTGACCTTGGCCTAAAGGAGATTGGAGAAGGCTGCTCAAACTTGGTAAGATTGAGCTTCCGACGAAATAATGCCATCGGT GCGGAGGGATTGAGGGCGGTTGCCACATTGGAAAACCTAGTTCAATTGGACATGGAGAGGTGTCCTGGCATTGGCGGTGGTGCTCTTGTTCATCTCAACG GTTTGTCAAAGTTGGAATCTCTTAACCTCAATTGGTGCAACTGCATTACGGATGTTGATGTGAAGCACCTTTCTGGTCTTACTAGCTTAAAGAGCTTGCA AATGTCTTGCAGCAAGGTTACAGATATGGGGATCTCTTATCTGAAAGATTTGCATAAGCTTACGCTTCTCAACTTGGAGGGTTGCCCAGTCACAGCCGCA TGCTTGGAATTCCTATCAGGTCTAGCTTCTCTGTCATACCTGAACCTTAACAGGTGTCATCTATCTGATGCTGGATGTCATAAGTTTTCAAAATTCGGAA AACTGAAGATTCTTAATTTGGGCTTCAATGACATCACGGATTCATGTTTGGTACACCTCCAAGGTTTAATGGCTTGCCTCCTCTGTGCTTGTGGGTCTTA TTGTGAAGCAGGCTTAACAGATTTGGAGAGCTTGAACTTGGATTCATGCCAAATAACTGATGATGGGATGCTGAGCTTAAAAGGTCTGTGGAGCTTAAAA TGCTTAGTGTTATCAGATACTGAAGTTGGAAGCAATGGGCTGTGCCACCTTTCCGGTATGGTTAATCTGGAGAGCGTAAATCTGTCATTCACAATGGTTA CTGATGGTGGTTTAAGGATACTGTCTGGATTAACTTCTATCAAATCTCTTAATCTGGACGCTCGCCAAATTACAGATACTGGACTTGCAGCCCTTACGAA TTTGACTGGATTGACTCATTTGGATCTCTTTGGAGCTCGTATTACTGATTCTGGGACATCCTACTTACGAAATTTCAAGAAGCTATGCTCCTTAGAAATT TGTGGGGGAGGATTAACTGATGCTGGTGTGAAGAACATCAAAGAACTGTCTTCTCTGACTCTTCTTAATTTATCACAGAACTGCAACCTAACAGACAGAT CACTGGAATTGATTTCAGGGCTGACTGGATTAATTTCATTAAATGTATCGAATTCTGGGATCACGGCTGCTGGTCTGCAGCACCTGAAGCCGCTGAAAAG CTTGAAGTCATTGAGCATGGAGTCGTGCAAGGTCACGGCTAGTGACATGAAGAAGCTTCAATCGATTGACCTCCCAAACCTCGTGACATTCCGACCTGAA GAGTAA
AA sequence Show only first row Show all	>Lus10025751 pacid=23177564 polypeptide=Lus10025751 locus=Lus10025751.g ID=Lus10025751.BGIv1.0 annot-version=v1.0 MGGFCSTKRGYLDREDYKNSLPGRICRKFSKNGSSKWLLFTPAASKQLVNDANIECPSLLDLCVLNICNDIHKHNSFSMLPRDITQLIFNQLVYSVRLTG ASLQAFHDCALQDIDMAEYPADVNDYWMETISSQGMSLLSVDISGSDVTDSGLGCLKVCNNLQTLNFDYCDNISDLGLKEIGEGCSNLVRLSFRRNNAIG AEGLRAVATLENLVQLDMERCPGIGGGALVHLNGLSKLESLNLNWCNCITDVDVKHLSGLTSLKSLQMSCSKVTDMGISYLKDLHKLTLLNLEGCPVTAA CLEFLSGLASLSYLNLNRCHLSDAGCHKFSKFGKLKILNLGFNDITDSCLVHLQGLMACLLCACGSYCEAGLTDLESLNLDSCQITDDGMLSLKGLWSLK CLVLSDTEVGSNGLCHLSGMVNLESVNLSFTMVTDGGLRILSGLTSIKSLNLDARQITDTGLAALTNLTGLTHLDLFGARITDSGTSYLRNFKKLCSLEI CGGGLTDAGVKNIKELSSLTLLNLSQNCNLTDRSLELISGLTGLISLNVSNSGITAAGLQHLKPLKSLKSLSMESCKVTASDMKKLQSIDLPNLVTFRPE E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	0	1
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	1.0	0.9635
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	2.0	0.9475
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	3.5	0.9405
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	4.5	0.9317
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	4.6	0.9188
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	4.9	0.9213
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	5.3	0.9339
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	6.7	0.9028
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	6.8	0.8630
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10004130 [exp]	7.5	0.8679

Compare expression of checked genes

Lus10025751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.