Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 426 / 5e-149 Protein of unknown function, DUF642 (.1) AT5G25460 417 / 1e-145 Protein of unknown function, DUF642 (.1) AT4G32460 415 / 1e-144 Protein of unknown function, DUF642 (.1.2) AT1G80240 402 / 1e-139 Protein of unknown function, DUF642 (.1) AT3G08030 337 / 3e-114 Protein of unknown function, DUF642 (.1.2) AT2G41810 331 / 1e-111 Protein of unknown function, DUF642 (.1) AT2G41800 328 / 2e-110 Protein of unknown function, DUF642 (.1) AT2G34510 323 / 2e-108 Protein of unknown function, DUF642 (.1) AT1G29980 318 / 3e-106 Protein of unknown function, DUF642 (.1.2) AT5G14150 149 / 4e-41 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035910 [exp] 686 / 0 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 422 / 1e-147 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 422 / 2e-147 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 422 / 2e-147 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 338 / 2e-114 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 335 / 5e-113 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10023314 [exp] 330 / 1e-110 AT2G34510 608 / 0.0 Protein of unknown function, DUF642 (.1) Lus10038495 [exp] 326 / 2e-108 AT2G34510 605 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029502 [exp] 317 / 6e-106 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059800 [exp] 478 / 5e-169 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 469 / 9e-166 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 418 / 6e-146 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 409 / 1e-141 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 341 / 8e-116 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 338 / 1e-114 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 332 / 3e-112 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 331 / 2e-111 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 323 / 8e-109 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 320 / 1e-107 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10025753 pacid=23177590 polypeptide=Lus10025753 locus=Lus10025753.g ID=Lus10025753.BGIv1.0 annot-version=v1.0 ATGGACACATCATCCGGCAGCCGCCGCCGGTCTAATTTATTGCTCTTGCTGCTACTTTGCGCCACTAATCTCGTTTCCTCCTTCACCCATGACGGTCTGC TTGAGAACGGGGACTTCGAGCACGGTCCAAAAAGATCCGAAATGAAAGGAACCGTGGTAAAGGCCAAAAACGGCATCCCAAGCTGGGAAATACAAGGGCT AGTGGAGTACATAAAGTCCGGCCAGAGGCAAGGAGACATGCTCCTCGTGGTCCCCAACGGAGCCTTCGCCGTCCGATTAGGAAACGACGGCTCCATCAAC ACGGCACCGTTAAAGGTCAAGAAAGGAAAGTTCTACTCCCTCACATTCAACGTGGCACGCACCTGCGCACAGGAGGAGAAGCTCAACGTCTCCGTCACCC CTAACGGCGACTCCGGCATCCTCCCCATGCAGACCATGTACAGCAGCACCGGCTGGGACGCCTTCTCATGGGCCTTCAAGGCCCAATCCGACCGAGTCGT GGTCTCCTTCCACAACCCGGCCGAGGACAAGGAGGACCCCGCTTGCGGCCCCCTCCTCGATTCCGTGGCCCTCAAGCTTCTCGCCAACGCCAAGCGACCC AAAGGGAACATGATGAAGAACGGGGACTTCGAGGACGGGCCTTACTTCATCAATAACGTAACCTCAGGGGTGCTGATCCCGTCCCACATCGAGGACGACC ATTCGCCGTTGATGGGTTGGATGATCGAATCGCTGAAAGCCGTCAAGTACATTGACGGCGCCCACTTCTCCATCCCCAGTGGGGGACGTGCGGTGGAGCT GCTCGCCGGGAGGGAGAGCGCGATCTCGCAGACTGTCCGGACCACCGTTGGGAAGACGTACGTGCTTACGTTCGCCGTCGGGGACGCTGGGGATCAGTGC GTGGGGCCGTTGGCTGTAGAGGCGTATGCGGGAGCGAGTAAAGTTCAGGTGACGTATACTTCCCAAGGGAAAGGTGGGTTTAAGAAGGGAGTGGTGCAGT TTAAGGCGTTGAAGGATCGTACGAGGATAACATTCATGAGCCCGTACTATACGATGAAGAACGATAAGACGGGGGTGCTTTGTGGGCCGGTGCTGGATGA CGTCAAGTTGGTTAGTGCTCGTTACCCGAGGAAGTTCATGTGA
AA sequence Show only first row Show all	>Lus10025753 pacid=23177590 polypeptide=Lus10025753 locus=Lus10025753.g ID=Lus10025753.BGIv1.0 annot-version=v1.0 MDTSSGSRRRSNLLLLLLLCATNLVSSFTHDGLLENGDFEHGPKRSEMKGTVVKAKNGIPSWEIQGLVEYIKSGQRQGDMLLVVPNGAFAVRLGNDGSIN TAPLKVKKGKFYSLTFNVARTCAQEEKLNVSVTPNGDSGILPMQTMYSSTGWDAFSWAFKAQSDRVVVSFHNPAEDKEDPACGPLLDSVALKLLANAKRP KGNMMKNGDFEDGPYFINNVTSGVLIPSHIEDDHSPLMGWMIESLKAVKYIDGAHFSIPSGGRAVELLAGRESAISQTVRTTVGKTYVLTFAVGDAGDQC VGPLAVEAYAGASKVQVTYTSQGKGGFKKGVVQFKALKDRTRITFMSPYYTMKNDKTGVLCGPVLDDVKLVSARYPRKFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	1.0	0.9925
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	1.4	0.9910
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	1.7	0.9819
AT2G32970			unknown protein		Lus10030016 [exp]	2.0	0.9817
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	3.9	0.9813
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	4.5	0.9755
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	5.5	0.9807
AT1G72490			unknown protein		Lus10015679 [exp]	7.2	0.9733
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	7.3	0.9765
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	7.5	0.9643

Compare expression of checked genes

Lus10025753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.