Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52760 563 / 0 LysoPL2 lysophospholipase 2 (.1) AT1G11090 256 / 6e-84 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 209 / 2e-65 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 207 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 197 / 2e-60 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 188 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 187 / 4e-57 alpha/beta-Hydrolases superfamily protein (.1) AT5G19290 185 / 5e-56 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 182 / 5e-55 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 176 / 6e-53 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035909 [exp] 674 / 0 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10011212 [exp] 243 / 6e-79 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 202 / 1e-63 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 204 / 7e-63 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 196 / 3e-60 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 192 / 7e-56 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10036530 [exp] 176 / 1e-52 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 176 / 2e-52 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 174 / 3e-51 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059200 [exp] 603 / 0 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 595 / 0 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.011G046500 [exp] 261 / 8e-86 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 202 / 2e-62 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 200 / 1e-61 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 188 / 2e-57 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 186 / 1e-56 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 183 / 3e-55 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 184 / 5e-55 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G049000 [exp] 177 / 5e-53 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10025754 pacid=23177506 polypeptide=Lus10025754 locus=Lus10025754.g ID=Lus10025754.BGIv1.0 annot-version=v1.0 ATGGCTTCGGATTCAGCCCAGCAGACGGAAACGCCGCCCAATTTCTGGGGTCACATGCCCGAGGAAGAATACTACACCTCCCAAGGAGTGAAGAATTCCA AGTCCTACTTTGACACTCCCAATGGAAAGCTCTTCACCCAGACCTTCCTTCCCTTGGACAAGCCGGTCAAAGCCTCCGTCTACATGACCCATGGCTACGG ATCTGACGCTGGATGGTTGTTCCAGAAGATCTGCATCACTTTCTCCACCTGGGGTTACGCTGTCTTCGCCGCCGATCTTCTCGGCCATGGCAGATCCGAC GGCCTTCGCTGCTACATGGGCGACATGGAGAAAATAGCGGCGACGTCGCTGTCGTTCTTCAAGCACATGAGGAACAGCGAAGAATACAAGGACTTGCCGG CTTTCTTATTCGGTGAGTCGATGGGCGGCTTAGCTACGATGCTCATGTACTTTCAATCCGAGCCATCCACGTGGACGGGCTTGATGTTCTCGGCCCCACT GTTCGTCATCCCTGAGCCCATGAAGCCCAGTAAGATCCACTTATTCGCGTACGGCCTGTTATTCGGCTTGGCGGACACGTGGGCCGCGATGCCAGACAAC AAGATGGTGGGCAAAGCCATCAAGGACCCTGCGAAGCTCAAGATCATCGCCTCTAACCCGCGGCGGTACACGGGCAAGCCCCGAGTAGGGACAATGCGGG AGATCGCCAGGGTGTGCCAGTACATACAAGACAACTTCTCCAGAGTGACGGCGCCGTTTTTGACCGTGCATGGCACCGCGGACGGGGTGACATGCCCGAG TTCGTCGCAGCTGTTGTACGAGAAGGCGAGCAGCGAGGACAAGAGCTTGAAGATATACGAAGGGATGTACCATTCGTTGATACAAGGGGAGCCTGATGAG AATGCTGAGCTTGTGTTGAAGGATATGAGGGAGTGGATTGATGAGAGGGTTGAGAGGTATGGTGGCTCTCCTAAATGA
AA sequence Show only first row Show all	>Lus10025754 pacid=23177506 polypeptide=Lus10025754 locus=Lus10025754.g ID=Lus10025754.BGIv1.0 annot-version=v1.0 MASDSAQQTETPPNFWGHMPEEEYYTSQGVKNSKSYFDTPNGKLFTQTFLPLDKPVKASVYMTHGYGSDAGWLFQKICITFSTWGYAVFAADLLGHGRSD GLRCYMGDMEKIAATSLSFFKHMRNSEEYKDLPAFLFGESMGGLATMLMYFQSEPSTWTGLMFSAPLFVIPEPMKPSKIHLFAYGLLFGLADTWAAMPDN KMVGKAIKDPAKLKIIASNPRRYTGKPRVGTMREIARVCQYIQDNFSRVTAPFLTVHGTADGVTCPSSSQLLYEKASSEDKSLKIYEGMYHSLIQGEPDE NAELVLKDMREWIDERVERYGGSPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	0	1
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	1.0	0.9793
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	2.0	0.9704
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	2.2	0.9638
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	2.4	0.9675
AT1G31130			unknown protein		Lus10028643 [exp]	3.2	0.9580
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009692 [exp]	3.6	0.9485
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	5.3	0.9673
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	6.3	0.9597
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	6.5	0.9604
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	7.3	0.9452

Compare expression of checked genes

Lus10025754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.