Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80300 889 / 0 ATNTT1 nucleotide transporter 1 (.1) AT1G15500 880 / 0 ATNTT2 TLC ATP/ADP transporter (.1) AT2G46950 545 / 0 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 526 / 4e-176 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT4G27710 514 / 3e-171 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT2G26710 380 / 3e-120 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14660 357 / 3e-111 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 352 / 2e-109 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14650 352 / 2e-109 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14640 351 / 3e-109 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035908 [exp] 1068 / 0 AT1G80300 927 / 0.0 nucleotide transporter 1 (.1) Lus10025756 [exp] 953 / 0 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10035907 [exp] 794 / 0 AT2G46950 498 / 7e-172 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10033044 [exp] 380 / 8e-120 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 357 / 2e-111 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 346 / 2e-107 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010821 [exp] 339 / 1e-104 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 324 / 5e-99 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10033555 [exp] 322 / 2e-98 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G175200 [exp] 950 / 0 AT1G80300 884 / 0.0 nucleotide transporter 1 (.1) Potri.003G058900 [exp] 939 / 0 AT1G80300 945 / 0.0 nucleotide transporter 1 (.1) Potri.006G022200 [exp] 545 / 0 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Potri.006G154500 [exp] 382 / 6e-121 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 381 / 2e-120 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 363 / 9e-114 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 355 / 6e-111 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 354 / 3e-110 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.002G134500 [exp] 354 / 4e-110 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G099400 [exp] 353 / 5e-110 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450 CL0015 [flax] [poplar] MFS PF03219 [flax] [poplar] TLC TLC ATP/ADP transporter
Representative CDS sequence Show only first row Show all	>Lus10025755 pacid=23177516 polypeptide=Lus10025755 locus=Lus10025755.g ID=Lus10025755.BGIv1.0 annot-version=v1.0 ATGGAAGCTGTGCTTCAAAGCAGAGGGCTTTTGTCGCTTCCTCCTAACCCTAAAACCCGAGGGTTGTATGCATTCCAGGGTTTAAAGCACAGGATTTCCG CCTCAAAACCAAGAATCTCACCTGGGATTTCCTTATCTTCTTCTTCTTCTTCTTCCAATGGGTTTCAAAAATTTCCGACCTTTGTGTCAAAGCCAAATGG TCTGTCTCTGTTCCAAAACAACAGAAGTCTGCATATCTGCAAGGCAGAAGCTGCTGCTGCATCCGAAGGGCAGCCTTTGATTGGCCAGGAGGGTGAGAAG AAGAAGTTTTTAGGTGTTGAGGTTGCGACTCTCAAAAAGATTATTCCTCTGGGTTTGATGTTCTTTTGTATTCTTTTCAACTATACAATCCTGAGGGATA CCAAGGACGTGCTGGTTGTGACTGCTCAAGGGAGCAGCGCTGAGATTATCCCGTTTCTAAAAACTTGGGTGAATTTGCCTATGGCCATTGGGTTTATGCT GCTCTATACAAAATTGTCTAATGTGCTGTCTAAGCAGGCACTCTTCTACACAGTAATATTGCCCTTTATTGCTTTCTTTGGGGCTTTTGGCTTTGTTTTG TATCCCTTGAGCAACCATCTCCACCCTCATGCATTTGCTGATAAGCTCCTCAACGTGCTTGGACCGAGGTTTCTCGGTCCACTTGCTATTCTGAGGATTT GGACTTTCTCTTTGTTCTATGTCATGGCTGAACTGTGGGGAAGCGTTGTGGTTTCAGTGCTGTTCTGGGGATTCGCCAATCAGATCACTACTGTTGATGA AGCAAAGAAATTTTACCCGTTGTTTGGACTTGGGGCAAATATTGCGTTGATTTTCTCGGGAAGGACAGTTAAATATTTCTCTAATCTCCGGAAGAATCTG GGTCCCGGAGTCGATGGTTGGGCTGTGTCCCTCAAAGGAATGATGAGTATTGTTGTATTGATGGGTGGTGCCATCTGTTTCCTGTACTGGTGGGTCAATA GATCCGTTGCTCTTCCCACCCGCAGCAAGAAGAAGAAGGAAAAGCCAAAGATGGGTACAATGGAGAGCTTGAAATTCCTCATCTCTTCAAGATACATCAG AGATCTTGCTACTTTAGTTGTTGCTTATGGCATTAGCATCAACCTTGTTGAGGTGACATGGAAATCTAAGCTCAAGGCACAGTTCCCTAGTCCGAACGAG TATTCTGCATTCATGGGCGACTTCTCCACGGCTACTGGAATAGCAACGTTCACTATGATGCTTGTAAGTCAATACATCTTCGACAAATATGGATGGGGAG CTGCAGCGAAGATCACACCGACTGTGTTGCTTCTCACGGGAGTTGGGTTCTTCTCGCTACTTTTGTTCGGAGCTCCTCTCACACCGACACTTATGCAATT CGGAATGACTCCTCTGCTTGCTGCTGTATATGTGGGTGCCCTGCAAAACATATTCAGCAAGAGTGCGAAGTACAGCTTGTTCGATCCGTGCAAAGAAATG GCTTACATTCCACTGGATGAGGAAACCAAGATTAAAGGGAAGGCAGCCATTGATGTGGTCTGCAATCCGCTAGGGAAGTCAGGAGGAGCTCTGATTCAAC AGTTCATGATCTTGACCTTTGGTTCACTTGCCAACTCGACACCATACCTCGGAGTGACGCTTCTGGGTATCGTGATTGCTTGGTTAGCTGCAGCTAGGTC CTTGGATGGTCAATTCACCGCTCTGCGACGAGAGGAAGAGCTCGAGAAGGAGATGGAAAGGGCTGCTGCTGTCAAAATTCCGGTTACACAAAAGGAAAGG ACTGAAATGGGTTCTGCACTACTGGGTGATCTGGTGGTAGCTCTGCTGGTGATTCTAACAACGAATCTTTTGCTGAAGCTGTTGAAGACCCTCTTGTGGA GACCTTATGCCTTAACCAAATACTTCCAGAAACAAGGAATCACTGGCCCTCCTTACCGTATACTCTATGGATCTATTCCGGAGATGAAACAACTCGGCCT AGAAGCCAAGGGCATGGTGTTGGATAACCACTCCAATGACATCACTCCCAAAACCATGCCTCACTATCACAACTGGTTCTCCAAATATGGAGATACTCTT CTGTTTTGGTACGGAGTGGAGCCTAGGATTACTGTGATGGATCCTGAACTAGTTAAACAAATCTTGTCCAACAAGTTTGGTTTCTTCGTCAAATCCTTCT ACAGGCCGTCTTTAGTGATAGGAGATGGGTTGGTTTTGTTAGATGGACCTGCGTGGGTTAGGCGGAGAAGGATTCTCAACCCTGCCTTCTCCATGGATAA GCTCAAGGTAATGATAACCAGAATGGCATCATGCACTTTAGAAATGGCAAATGAGTGGGAAAAACAGCTTGCTTCTGGATCTTCTGAGGTAGAAGTAAAT TCAGTGTTTCAGAAACTTACTGCTGATATAATTTCTCACACTTCCTTTGGAAGTAGCTACCTTGAAGGAATACAAGTCTTCAAAGCATTACAACATCTCC AGAGCCGCAATGCAGCTGTACTTACTAATGTTTTCATCCCTGGAACCCAGTATCTTCCTACGCCATCGAATCTGGAGATATGGAAGCTAAATAGGGAACT TACTACCTCACTTAGGAGCATCATTGAGAACAGGTTAAGATCGAATTCTGGCAAAGGTGGTGGTGGTGGTTATGGAGACGATCTCCTTGGTATTATGATT GAAGCCTCCGAATTGGCTGATGCTGACACCAAGAGCAGCATCACTACTACCAAGATGAACATGAAAGAAATCATGGACGAATGCAGAACATTCTTCTTCG CAGGCCACGAGACCACCTCCAATCTGTTAACATGGGCCCTTTTCCTTGTTACCGTGCACCAAGAATGGCAGCAAATGCTCAGGGAAGAAGTGCTCAAGCA GTGTGGGATGAACATTCCAGATGCTGATTCATTGCCAAAGCTCAAACTGATGAATATGGTGCTACTGGAGACACTGAGGCTGTACAGCCCTGCAATAGAG ACTCTGAGGAAGGCAACTGAAGACATGAAACTGGGGAAGTTGGATATACCGAAAGGAACCTCTTTCTCAATCCCAATCATCATGATCCAGAGGAGCAAGG AATTCTGGGGAGAGGATTCAAATGAGTTCAAGCCAATGAGATTCGAGAATGGAGTCTCTAACGCTGCAAAACACCCCAATGCTTTCCTGGCCTTCGGGAT GGGTCCAAGAGTCTGTATTGGACAGAACTTCTCGATGATGGAAGCCAAATCTGTGATTGCACTGCTCCTCCAGAGGTTTTCCTTCACCCTTTCTCCTCAA TATAAGCATGCTCCGGTCAACAACCTCACTTTACAGCCCCAATATGGCCTTCCTCTCATTGTTAAGCCTCTCCAAATGTAA
AA sequence Show only first row Show all	>Lus10025755 pacid=23177516 polypeptide=Lus10025755 locus=Lus10025755.g ID=Lus10025755.BGIv1.0 annot-version=v1.0 MEAVLQSRGLLSLPPNPKTRGLYAFQGLKHRISASKPRISPGISLSSSSSSSNGFQKFPTFVSKPNGLSLFQNNRSLHICKAEAAAASEGQPLIGQEGEK KKFLGVEVATLKKIIPLGLMFFCILFNYTILRDTKDVLVVTAQGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKQALFYTVILPFIAFFGAFGFVL YPLSNHLHPHAFADKLLNVLGPRFLGPLAILRIWTFSLFYVMAELWGSVVVSVLFWGFANQITTVDEAKKFYPLFGLGANIALIFSGRTVKYFSNLRKNL GPGVDGWAVSLKGMMSIVVLMGGAICFLYWWVNRSVALPTRSKKKKEKPKMGTMESLKFLISSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNE YSAFMGDFSTATGIATFTMMLVSQYIFDKYGWGAAAKITPTVLLLTGVGFFSLLLFGAPLTPTLMQFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEM AYIPLDEETKIKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGVTLLGIVIAWLAAARSLDGQFTALRREEELEKEMERAAAVKIPVTQKER TEMGSALLGDLVVALLVILTTNLLLKLLKTLLWRPYALTKYFQKQGITGPPYRILYGSIPEMKQLGLEAKGMVLDNHSNDITPKTMPHYHNWFSKYGDTL LFWYGVEPRITVMDPELVKQILSNKFGFFVKSFYRPSLVIGDGLVLLDGPAWVRRRRILNPAFSMDKLKVMITRMASCTLEMANEWEKQLASGSSEVEVN SVFQKLTADIISHTSFGSSYLEGIQVFKALQHLQSRNAAVLTNVFIPGTQYLPTPSNLEIWKLNRELTTSLRSIIENRLRSNSGKGGGGGYGDDLLGIMI EASELADADTKSSITTTKMNMKEIMDECRTFFFAGHETTSNLLTWALFLVTVHQEWQQMLREEVLKQCGMNIPDADSLPKLKLMNMVLLETLRLYSPAIE TLRKATEDMKLGKLDIPKGTSFSIPIIMIQRSKEFWGEDSNEFKPMRFENGVSNAAKHPNAFLAFGMGPRVCIGQNFSMMEAKSVIALLLQRFSFTLSPQ YKHAPVNNLTLQPQYGLPLIVKPLQM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Lus10025755 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	1.0	0.9530
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	12.5	0.9216
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	17.9	0.9467
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	18.2	0.9488
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	18.3	0.9502
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	21.8	0.9393
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	25.9	0.9426
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	26.2	0.9171
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	27.7	0.9220
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	30.5	0.9333

Compare expression of checked genes

Lus10025755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.