Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46950 557 / 0 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 542 / 0 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT4G27710 526 / 0 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT2G26710 396 / 6e-133 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14660 374 / 3e-124 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 368 / 4e-122 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 367 / 6e-122 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 367 / 6e-122 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14650 367 / 7e-122 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14610 358 / 3e-118 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025755 [exp] 983 / 0 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10035907 [exp] 826 / 0 AT2G46950 498 / 7e-172 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10033044 [exp] 391 / 1e-130 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 376 / 3e-125 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 358 / 4e-118 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 347 / 3e-114 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033555 [exp] 338 / 2e-110 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 338 / 2e-110 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017595 [exp] 333 / 2e-108 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G022200 [exp] 552 / 0 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Potri.006G154500 [exp] 395 / 8e-133 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 394 / 4e-132 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 376 / 6e-125 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 364 / 2e-120 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.005G035200 [exp] 363 / 4e-120 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G101500 [exp] 362 / 1e-119 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 361 / 2e-119 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 359 / 9e-119 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 358 / 3e-118 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025756 pacid=23177662 polypeptide=Lus10025756 locus=Lus10025756.g ID=Lus10025756.BGIv1.0 annot-version=v1.0 ATGGGTTCTGCACTACTGGGTGGTCTGGTGGTAGCTCTGCTGGTGATTCTAACAACGAATCTTTTGCTGCAGCTGTTGAAGACCCTCTTGTGGAGACCTT ATGCCTTAACCAAATACTTCCAGAAACAAGGAATCACTGGCCCTCCTTACCGTATACTCTATGGATCTCTTCCGGAGATGAAACAACTCGGCCTAGAAGC CAAGGGCATGGTGTTGGATAACCACTCCAATGACATCACTCCCAAAATCATGCCTCACTATCACAACTGGTTCTCCAAATATGGAGATACTCTTCTGTAT TGGTACGGAGTGGAGCCTAGGATTACTGTGATGGATCCTGAACTAGTTAAACAAATCTTGTCCAACAAGTTTGGTTTCTTCGTCAAATCCTTGTACAGGC CGTCTTTAGTGATAGGAGAAGGGTTGGTTTTGTTAGATGGACCTGCGTGGGCTAGGCGGAGAAGGACTCTCAACCCCGCCTTCTCCATGGATAAGCTCAA GGTAATGATAACCAGAATGGCATCATGCACTTTAGAAATGGCAAATGAGTGGGAAAAACAGCTTGCTTCTGGATCTTCTGAGGTAGAAGTAAATTCAGTG TTTCAGAAACTTACTGCTGATATAATTTCTCACACTTCCTTTGGAAGTAGCTACCTTGAAGGAATACAAGTCTTCAAAGCATTACAACATCTCCAGAGCC GCAATGCATCTGTACTTACTAATGTTTTCATCCCTGGAACCCAGTATCTTCCTACGCCATCGAATCTGGAGATATGGAAGCTAAACAGGGAACTTACTAC CTCACTTAGGAGCATCATCGAGAACAGGTTAAGATCGAATTCTGGCAAAGGTGGTGGTGGTGGTTATGGAGACGATCTCCTTGGTATTATGATTGAAGCC TCCGAATTGGCTGATGCTGACACCAAGAGCAGCATCACTACTACCAAGATGAACATGAAAGAAATCATGGACGAATGCAGAACATTCTTCTTCGCAGGCC ACGAGACCACCTCCAATCTGTTAACATGGGCCCTTTTCCTTGTTACCGTGCACCAAGAATGGCAGCAAATGCTCAGGGAAGAAGTGCTCAAGCAGTGTGG GATGAACATTCCAGATGCTGATTCATTGCCAAAGCTCAAACTGATGAATATGGTGCTACTGGAGACACTGAGGCTGTACAGCCCTGCAATAGAGACTCTG AGGAAGGCAACTGAAGACATGAAACTGGGGAAGTTGGATATACCAAAAGGAACCTCTTTATCAATCCCAATCATCATGATCCAGAGGAGCAAGGAATTCT GGGGAGAGGATTCAAATGAGTTCAAGCCAATGAGATTCGAGAATGGAGTCTCTAACGCTGCAAAACACCCCAATGCTTTCCTGGCCTTCGGGATGGGTCC AAAAGTCTGTATTGGACAGAACTTCTCGATGATGGAAGCCAAATCTGTGATTGCACTGCTCCTCCAGAGGTTTTCCTTCACCCTTTCTCCTCAATATAAG CATGCTCCGGTCAACAACCTCACTTTACAGCCCCAATATGGCCTTCCTCTCATTGTTAAGCCTCTCCAAATGTAA
AA sequence Show only first row Show all	>Lus10025756 pacid=23177662 polypeptide=Lus10025756 locus=Lus10025756.g ID=Lus10025756.BGIv1.0 annot-version=v1.0 MGSALLGGLVVALLVILTTNLLLQLLKTLLWRPYALTKYFQKQGITGPPYRILYGSLPEMKQLGLEAKGMVLDNHSNDITPKIMPHYHNWFSKYGDTLLY WYGVEPRITVMDPELVKQILSNKFGFFVKSLYRPSLVIGEGLVLLDGPAWARRRRTLNPAFSMDKLKVMITRMASCTLEMANEWEKQLASGSSEVEVNSV FQKLTADIISHTSFGSSYLEGIQVFKALQHLQSRNASVLTNVFIPGTQYLPTPSNLEIWKLNRELTTSLRSIIENRLRSNSGKGGGGGYGDDLLGIMIEA SELADADTKSSITTTKMNMKEIMDECRTFFFAGHETTSNLLTWALFLVTVHQEWQQMLREEVLKQCGMNIPDADSLPKLKLMNMVLLETLRLYSPAIETL RKATEDMKLGKLDIPKGTSLSIPIIMIQRSKEFWGEDSNEFKPMRFENGVSNAAKHPNAFLAFGMGPKVCIGQNFSMMEAKSVIALLLQRFSFTLSPQYK HAPVNNLTLQPQYGLPLIVKPLQM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	0	1
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Lus10025755 [exp]	1.0	0.9530
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	1.7	0.9273
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	4.2	0.9189
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	4.7	0.9159
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	6.8	0.8972
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	8.5	0.9267
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	9.8	0.9332
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	11.2	0.9232
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	12.7	0.9075
					Lus10015401 [exp]	13.9	0.9014

Compare expression of checked genes

Lus10025756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.