Plant FIBer expression Database

Lus10025757 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15550 493 / 3e-165 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035906
[exp]
1169 / 0 AT3G15550 585 / 0.0 unknown protein
Lus10025758
[exp]
679 / 0 AT3G15550 453 / 9e-155 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G175500
[exp]
624 / 0 AT3G15550 706 / 0.0 unknown protein
Potri.003G058600
[exp]
624 / 0 AT3G15550 687 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10025757 pacid=23177602 polypeptide=Lus10025757 locus=Lus10025757.g ID=Lus10025757.BGIv1.0 annot-version=v1.0
ATGGCCTCAGCTTCTGATTACTGGTCTAAAGAAGAAGAAGAAGAAGAAGAAACAGCTGTGGACGCCACACTTGGCTACCCAAAAGCTTACGCCAAATGTT
GCAGAGATGGCGGCTTGGTCGGCATTTATCTGCACGGCCCTCCTTTCACTTTTACTCCCTATCACCCGCTTCATCACCACGAGATCGAGAGGGCAAGAGA
TTTGGATCAAATGTTTCCGGTGCTGGATCCAAAGGCCAAACCCACAGCCAAGCTTAAGATTTTCGTCAGTCTGCTATGGAAGCAGCTCAACCATCTCGGG
AACGCTGGATTTGACCCTGAAGTAATCCGAGTAGATCCGTATGGAAATGTTGTGTATTTCCATGCGGACAAGGCTTCTCCCCTCTATTGGGACATTGACC
ACTGGTTTCCTTGCTCAAGAGGAGGAGTGACCGTTCCTAGTAATTTGAGGATCTTACAGTGGCAAGTCTGTAAAAGGAAGCACAACAAGCTGGAATTTCA
AGTGCCGTGGTGGGATTTACAGCTGGGGATCTCTGTTAACCAGTTCCTCTCCATCTTTGCTTCTTCCAACTCTGATTTCAGGAGGAGGGGGTTTTCGTTT
CTGTTCCTGGAAGGTGAGAATGAAGAATTGAATGAATCCCAGACAGTGGAATCACACTCTTTCCCACACCATTTCTCCGAATCAAAGAAAGAGCTAGGCC
TTGCTCCAGCCTCAATTGTGGTGTCTCGAAGAAGAGGAGAGCCCCACGATTCTTCTTCTTCAACCCCTTTGAAATCCTTGGATTTCAACAACAAACAGAT
GATGATGAGACCATATTCTCCCATAGTTGCTGCAAAGAAAGCAGTGATGAAAGAAAATGAGGCGCCTGAATTCGGCCTGAATCCATACCAAGCAATAGTG
AAGGCGAGGGATTCACTGAAGCAGCGCAGAGAAGAAGAGGCTCAGAAACTTGTGGCGGAGATACAAAACTTGGATGTAGAAGTTGATGAAGTGATGAGAA
GCAGTAACAAGGAGAAGCTTGTAATTCAGGACCTGGAACTCGAACTAACCAAGCGAAGAAGAAGAGCAGAGAAGTGCAGGCGGCTTGCAGAGGCGCAGTC
TTCTTACAGGACCATGCTCGAGAAGATGATCCGAGATGCTATGCACCAGAGCGTGGTTTACAAGGAACAGGTGAGGCTGAACCAAGTTGCAACCAGTGCT
CTGATGGCGAGGCTAGAGGCACAGAAGTCGATTTGCGATGCATCGGAGAAGGAACTCCACAAGAAGTTCAGGGAGAGGGATGCTTTGGAGAAAGAGATTA
GGCCTGAATGGGAGGAACAAGCCAGGAAGCGATCAAGGATGGATCATCATCATGTTGACTCAACAGATAACTATGATGAGGAGGAGGAGCAAGAGATAAT
AGATCCTCATAATAAAGCTCTTCTTTATCTGGAAGAGGATGATCAGTTGAAAGCATCTGAAGCAGATGATGGTGAATCTCAAAATGAATATGGCAAGTAT
GAGGGAACAGAGGATGAGAGAAAGAAGAAGGAAGCTGATAAGCATGATGAACTAGTAGCTGCATTGGAAGACCAAGTTTTTATTGAGGAAAAGCTTCAAG
CCCTGGAAATAGATGAAGAAAAGAAGCATGAGGAAAAGGTTACACGACAACAAGCCAGAGAAGATAGAGAAGAAGATGAGGAGGAAAGCAGGAAGGTCCG
TGGTAAGGGAAATGTAGACAAGTGGCTGAAAATGTTGTTGGAGAACTCACAAGATCAAATTCAACCTCAACATATCCAAGCACCACCAACAACAACTATT
TTCAAGACCACTGACGACATAATCAACAGACTGGATGACAAGTTCCCATTGAAACAGCAAGAAAATATCAAGTGTGACGAGGCTGCTGCTGATGATGATG
ATGGTGAGAAACGGAGAAGGATTGCAAGGAACAAGAGTTTTGATCAAGGTGAACAAAGTAAAAAGGCACTTCCAAGGTCTGAGAGTGCCAGGACGTTACG
CCGCATCCCATCTTCCCCATCACTATTGATTTCCAGCGTTCGAAAAGGTGTTGAATCCATGTTCAAGATGAAGAACAAGAAAAAACTAATTCTACAATGA
AA sequence
>Lus10025757 pacid=23177602 polypeptide=Lus10025757 locus=Lus10025757.g ID=Lus10025757.BGIv1.0 annot-version=v1.0
MASASDYWSKEEEEEEETAVDATLGYPKAYAKCCRDGGLVGIYLHGPPFTFTPYHPLHHHEIERARDLDQMFPVLDPKAKPTAKLKIFVSLLWKQLNHLG
NAGFDPEVIRVDPYGNVVYFHADKASPLYWDIDHWFPCSRGGVTVPSNLRILQWQVCKRKHNKLEFQVPWWDLQLGISVNQFLSIFASSNSDFRRRGFSF
LFLEGENEELNESQTVESHSFPHHFSESKKELGLAPASIVVSRRRGEPHDSSSSTPLKSLDFNNKQMMMRPYSPIVAAKKAVMKENEAPEFGLNPYQAIV
KARDSLKQRREEEAQKLVAEIQNLDVEVDEVMRSSNKEKLVIQDLELELTKRRRRAEKCRRLAEAQSSYRTMLEKMIRDAMHQSVVYKEQVRLNQVATSA
LMARLEAQKSICDASEKELHKKFRERDALEKEIRPEWEEQARKRSRMDHHHVDSTDNYDEEEEQEIIDPHNKALLYLEEDDQLKASEADDGESQNEYGKY
EGTEDERKKKEADKHDELVAALEDQVFIEEKLQALEIDEEKKHEEKVTRQQAREDREEDEEESRKVRGKGNVDKWLKMLLENSQDQIQPQHIQAPPTTTI
FKTTDDIINRLDDKFPLKQQENIKCDEAAADDDDGEKRRRIARNKSFDQGEQSKKALPRSESARTLRRIPSSPSLLISSVRKGVESMFKMKNKKKLILQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15550 unknown protein Lus10025757
[exp]
0 1
AT4G02800 unknown protein Lus10014668
[exp]
2.2 0.9796
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10028434
[exp]
3.5 0.9768
AT4G02800 unknown protein Lus10000658
[exp]
3.9 0.9748
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Lus10039129
[exp]
5.0 0.9712
AT4G32830 ATAUR1 ataurora1 (.1) Lus10006033
[exp]
6.0 0.9701
AT4G17000 unknown protein Lus10010744
[exp]
6.5 0.9694
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10041886
[exp]
6.6 0.9746
AT4G15830 ARM repeat superfamily protein... Lus10043416
[exp]
6.9 0.9670
AT1G70340 Plant protein of unknown funct... Lus10029158
[exp]
8.7 0.9627
Lus10030118
[exp]
9.0 0.9534

Lus10025757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.