Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15550 382 / 1e-126 unknown protein AT3G47490 41 / 0.0009 HNH endonuclease (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025757 [exp] 675 / 0 AT3G15550 587 / 0.0 unknown protein Lus10035906 [exp] 671 / 0 AT3G15550 585 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058600 [exp] 454 / 8e-155 AT3G15550 687 / 0.0 unknown protein Potri.001G175500 [exp] 449 / 3e-153 AT3G15550 706 / 0.0 unknown protein Potri.009G004200 [exp] 42 / 0.0002 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025758 pacid=23177444 polypeptide=Lus10025758 locus=Lus10025758.g ID=Lus10025758.BGIv1.0 annot-version=v1.0 ATGGCCTCAGCTTCTGATTACTGGTCTAAAGAAGTAGAAGAAGAAGAAACGGCGGTGGACGCCACACTCGGCTACCCAAAAGCTTACGCCAAATGTTGCA GAGATGGCGGCTTGGTCGGCATTTATCTGCACGGCCCTCCTTTCACTTTTACTCCCTATCACCCGCTTCATCACCACGAGATCGAGAGGGCAAGAGATTT GGATCAAATGTTTCCGGTGCTGGATCCAAAGGCCAAACCCACAGCCAAGCTTAAGATTTTCGTCAGTCTGCTATGGAAGCAGCTCAACCATCTCGGGAAC GCTGGATTTGACCCTGAAGTAATCCGAGTAGATCCGTATGGAAATGTTGTGTATTTCCATGCGGACAAGGCTTCTCCCCTCTATTGGGACATTGACCACT GGTTTCCTTGCTCAAGAGGAGGAGTGACCGTTCCTAGTAATTTGAGGATCTTACAGTGGCAAGTCTGTAAAAGGAAGCACAACAAGCTGGAATTTCAAGT GCCGTGGTGGGATTTACAGCTGGGGATCTCTGTTAACCAGTTCCTCTCCATCTTTGCTTCTTCCAACTCTGATTTCAGGAGGAGGGGGTTTTCGTTTCTG TTCCTGGAAGGTGAGAATGAAGAATTGAATGAATCCCAGACAGTGGAATCACACTCTTTCCCACACCATTTCTCCGAATCAAAGAAAGAGCTAGGCCTTG CTCCAGCCTCAATTGTGGTGTCTCGAAGAAGAGGAGAGCCGCACGATTCTTCTTCTTCGACTCCGTTGAAATCCTTGGATTTCAACAACAAACAGATGAT GATGAGGCCATATTCTCCCATAGTTGCTGCAAAGAAAGCAGTGATGAAAGAAAATGAGGCGCCTGAATTCGGCCTGAATCCATACCAAGCGATAGCAAAG GCAAGAGATTCACTGAAGCAGCGCAGAGAAGAAGAGGCTCAGAAACTTGTGGCGGAGATACAAAACTTGGATGTAGAAGTTGATGAAGTGATGAGAAGCA GTAACAAGGAGAAGCTTGCAATTCAGGACCTGGAAGTGGAACTAACCAAGCGAAGAAGAAGGGCAGAGAAGTGCAGGCGGCTTGCAGAGGCGCAGTCTTC TTACAGGACCATGCTCGAGAAGATGATCCGAGATGCTATGCACCAGTATGCACCAACACACAATTAA
AA sequence Show only first row Show all	>Lus10025758 pacid=23177444 polypeptide=Lus10025758 locus=Lus10025758.g ID=Lus10025758.BGIv1.0 annot-version=v1.0 MASASDYWSKEVEEEETAVDATLGYPKAYAKCCRDGGLVGIYLHGPPFTFTPYHPLHHHEIERARDLDQMFPVLDPKAKPTAKLKIFVSLLWKQLNHLGN AGFDPEVIRVDPYGNVVYFHADKASPLYWDIDHWFPCSRGGVTVPSNLRILQWQVCKRKHNKLEFQVPWWDLQLGISVNQFLSIFASSNSDFRRRGFSFL FLEGENEELNESQTVESHSFPHHFSESKKELGLAPASIVVSRRRGEPHDSSSSTPLKSLDFNNKQMMMRPYSPIVAAKKAVMKENEAPEFGLNPYQAIAK ARDSLKQRREEEAQKLVAEIQNLDVEVDEVMRSSNKEKLAIQDLEVELTKRRRRAEKCRRLAEAQSSYRTMLEKMIRDAMHQYAPTHN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15550			unknown protein		Lus10025758 [exp]	0	1
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	1.0	0.9739
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	1.4	0.9738
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	3.0	0.9732
AT1G04030			unknown protein		Lus10008231 [exp]	6.5	0.9562
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	6.7	0.9717
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	6.9	0.9731
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	7.2	0.9571
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	7.7	0.9685
AT5G48310			unknown protein		Lus10016071 [exp]	9.0	0.9603
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	10.1	0.9070

Compare expression of checked genes

Lus10025758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.