Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63550 236 / 3e-68 DEK domain-containing chromatin associated protein (.1.2) AT3G48710 222 / 4e-64 DEK domain-containing chromatin associated protein (.1) AT5G55660 182 / 8e-48 DEK domain-containing chromatin associated protein (.1) AT4G26630 169 / 1e-43 DEK domain-containing chromatin associated protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035905 [exp] 822 / 0 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1) Lus10022439 [exp] 627 / 0 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1) Lus10016746 [exp] 280 / 2e-84 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1) Lus10035904 [exp] 194 / 6e-56 AT1G67120 44 / 1e-04 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100700 [exp] 396 / 2e-128 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2) Potri.012G102500 [exp] 298 / 6e-91 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2) Potri.011G093200 [exp] 201 / 3e-55 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2) Potri.001G367400 [exp] 191 / 1e-51 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025759 pacid=23177567 polypeptide=Lus10025759 locus=Lus10025759.g ID=Lus10025759.BGIv1.0 annot-version=v1.0 ATGGCGAGCGAAACCCTAGAGGAGAACACGAAACCGGAGCAGGAAGCTCCTCTTGCGACGAGCAAAGAGGATCTCAAGCCCGAACAAGTGGACAAACAGA AAGCTGACGAGGAGGATATTAACGAAAAGCAAGAGGATGTGGACTCGAAGATGAAAGACAAGCACGGCCAAGCTGACGCAGAAATGAAAGATAAGGATGA GCAAGTGGAGGACGCCGCCGAAATTAAGAGCAGTCGGCACGAAGTGGACGCGGAGATGGAAGACAAGCCAGAGGAAGTGGAGACCGATGTGAAAGCCAAG CTCGAGGACGAAGAAGTGAAGAATGAGGAGGACGAGGATGTTAACGAAAAGCAAGAGGATGTTAACGAGAAGATGAAAGACAAGCACGACGAAGTTGACA CAGAGGTGAAAGATAAAGATGTGGAAGTGGACGCCGCTGATATTAAGAGCAGTCGGGACGAAGTGGACGTGGAGATGAAAGGCAAGCCAGAGGAAGTGGA GACCGAGATGAAAGCCAAGCTGGAGGAAGAAGAAGTGAAAAATAAGGAGGACGAGGAAGCCAAGCTGGAGGAAGAAGTAGTGGAAAATAAGGAGGACGAG GATATTAACGTAAAGCAGGAGGATTTGGACGATAAGATGAAAGACAAGCACGACGAAGTTGATGCAGTGATGAAAGATAAGGATGAGGAAGTGGACGCCG CCGATATTAAGAGCAGTCGGGACGAAGTGGACGCGCAGATGAAAGACCAAAACCCTCTTGTACAAGGAAATGAGGAAGAGCCTGCCGAGAAAGCTGGCGG AGACAAAGAGGAGGAGGCTGAGAAAGATCTCGATGAAAAGGAAACAGAAGAAGAAGATACGATGAAAGATAAGCAAGTTGCCAGCAAGAGTTCTGCCAAG GGACGTGAGAAGACTCCTGAAGTCATCGAGAAGAAAATCCCAAGCAGTGAACGCCCAACTGCCGAGGAAGCTAGTGGAGACAAAGAGGAGGATGCTGAGA AAGATCTCGATGAGGAGAATGGCCAGGACGAAGGAGATGGCGAGGGTGTTGAAGAAGAAACAGAAGAAGAAAATATGGTGAAAAGTAAGCAAGTTTCCAG CAGGAGTTCTGCCAAGGAACGGGAGAAGATTCCTGAAGCCACCGAGAAGCAAACCCCAAGCAGTGATCGCCCAACTAGGGAGCGGAAGATGGTTGAGAGA TACTCTTTTCCCGAGCGTGGAAGATCCACTGTCAGAAAGACCTTGTCGATAGAAAAGGGCCGTGGGACAGCCCTGAAGGATATTCCCAATGTGGCCTTCA AGTTGTCGAAGAGAAAATCTGATGAGACTTTGCATATGCTTCACACTATACTTTTTGGAAAGAAAGGAAAGGTCCAAAGTATGAAGAGAAATATTGGAAG ATTTTCTGGCTTCGTTTGGACTGGGAATGAGGGAAAACAAAAGTCAAGAATGAAGGAAAAGCTTGACAAGTGTGTTAAGGAAAGTCTACTAGACTTCTGT GATGTACTCAATATTCAAGTAACTAAAGCCACCGTGAAAAAGGAAGATCTCACTGTAAAAATCTTGGAGTTCTTGGAATCTCCTCATGCAACAACTGATG TTATGCTTGCTGACAAGGAACAGAAAGTCAAGAGGCGGAGGTCAATGACTGGGAAAAATTCAAGCCCTGGGGAAGCATCAGCTACACCTGCTAAGAGACA AAAACAGACATCTCAGCCTGAGAAAAAACAAACTCCCTCTTCCAAAGGTGACGAAGAAGAAGATGATGATAAGGTTGAATCAGAAGATCTGAATGATGAC TCTCAAAGTGATGATGATGAGGCTCTTCCTCAGAAAGAGGAGAGCGATCAGGATGAGGACAGATCGGAAGAAAAGAATGACGATCCAAAGGAGGAAACAC CAACCCAGAAGTCATCAAGGAAAACTGTGAAGGATACTTCAAGTTTAAAAGCCAAGGAGAAAAACACACTTCGCAAGAGCAGTGCCACCACGAAGTCCGT GAAGAGTACATCAAGGTCCAACAAGTCATCTGCTCCTTCAGTAAAACCAAGTCCAGATACAGATGCAGGTTCTGGTTCAGTTTCTAAATCAAAGGGACCT GCATCAAGGAAACGCAAGGCTGAAGAACAAGATGTTTCAGCAAAGGAAATCACTAAGAAAAAACTGGCAGGCGGCAAGTCAACTGGAAAAGTTTCTGCAA AAGATCAAGGGAAAGGCAAATCTAGGAAGAAGGCCAAGACTGAACCCACAAGAGAAGAGTTGCATGCAGTTGTTGTTAACATCCTGAAAGAAGTTGATTT CGATACAGCAACTTTGTCAGATATTCTCAAGAAACTTGGTAAACACTTCAACGTAGATCTATTGCACAGAAAAGCAGAGGTGAAGGAGGCTATAACAGAG GTTATTAAGAACATGTCGGATGAGGAGGAAGTAGATGAAGATGACAAAGATGATGATAATGCTGAGGCGGGAGGGGATGCGGAAGAAGATGATGATTAG
AA sequence Show only first row Show all	>Lus10025759 pacid=23177567 polypeptide=Lus10025759 locus=Lus10025759.g ID=Lus10025759.BGIv1.0 annot-version=v1.0 MASETLEENTKPEQEAPLATSKEDLKPEQVDKQKADEEDINEKQEDVDSKMKDKHGQADAEMKDKDEQVEDAAEIKSSRHEVDAEMEDKPEEVETDVKAK LEDEEVKNEEDEDVNEKQEDVNEKMKDKHDEVDTEVKDKDVEVDAADIKSSRDEVDVEMKGKPEEVETEMKAKLEEEEVKNKEDEEAKLEEEVVENKEDE DINVKQEDLDDKMKDKHDEVDAVMKDKDEEVDAADIKSSRDEVDAQMKDQNPLVQGNEEEPAEKAGGDKEEEAEKDLDEKETEEEDTMKDKQVASKSSAK GREKTPEVIEKKIPSSERPTAEEASGDKEEDAEKDLDEENGQDEGDGEGVEEETEEENMVKSKQVSSRSSAKEREKIPEATEKQTPSSDRPTRERKMVER YSFPERGRSTVRKTLSIEKGRGTALKDIPNVAFKLSKRKSDETLHMLHTILFGKKGKVQSMKRNIGRFSGFVWTGNEGKQKSRMKEKLDKCVKESLLDFC DVLNIQVTKATVKKEDLTVKILEFLESPHATTDVMLADKEQKVKRRRSMTGKNSSPGEASATPAKRQKQTSQPEKKQTPSSKGDEEEDDDKVESEDLNDD SQSDDDEALPQKEESDQDEDRSEEKNDDPKEETPTQKSSRKTVKDTSSLKAKEKNTLRKSSATTKSVKSTSRSNKSSAPSVKPSPDTDAGSGSVSKSKGP ASRKRKAEEQDVSAKEITKKKLAGGKSTGKVSAKDQGKGKSRKKAKTEPTREELHAVVVNILKEVDFDTATLSDILKKLGKHFNVDLLHRKAEVKEAITE VIKNMSDEEEVDEDDKDDDNAEAGGDAEEDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	0	1
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	1.0	0.9392
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	2.2	0.9030
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	4.0	0.9056
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	5.3	0.9004
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	5.7	0.8903
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	5.8	0.8797
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	8.1	0.8856
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	8.1	0.9250
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	11.4	0.8738
AT1G50660			unknown protein		Lus10043111 [exp]	14.0	0.8667

Compare expression of checked genes

Lus10025759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.