Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14746 66 / 8e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035902 [exp] 261 / 9e-89 AT4G14746 84 / 7e-20 unknown protein Lus10039368 [exp] 63 / 9e-12 AT4G14746 164 / 1e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176800 [exp] 99 / 5e-25 AT4G14746 87 / 8e-21 unknown protein Potri.003G057700 [exp] 91 / 2e-22 AT4G14746 83 / 1e-19 unknown protein Potri.008G156800 [exp] 59 / 1e-10 AT4G14746 176 / 1e-55 unknown protein Potri.005G051900 [exp] 57 / 6e-10 AT4G14746 120 / 1e-33 unknown protein Potri.010G082500 [exp] 57 / 9e-10 AT4G14746 187 / 4e-60 unknown protein Potri.013G039300 [exp] 57 / 1e-09 AT4G14746 115 / 9e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025761 pacid=23177626 polypeptide=Lus10025761 locus=Lus10025761.g ID=Lus10025761.BGIv1.0 annot-version=v1.0 ATGGACTCACAACTCGGCAGCTTTGCTCTGGCGTCGTTTCTTATAATTTCTCTGCAGGGTCTCACCATTCTGTCCACATCAGCCGCTCCCACGGTAACTA ATGGCTTCCTCGGCGGCAACTTCCTTGGAGATTTGGTTTGCGAATTCACGGATTGCGGGAATGGAAAGTGCAAGGCGGCGTCGAAAGGTTTGGGTGGGTT TGAGTGTGAATGCGATCCTGGCTGGAAGACTCATAAAGCCGCTCCTTACACTTTCCCTGCTTGCATTCTCCCCAACTGCTCTGTTGATCTTGGGTGTGAC AAGACGGCTCCGGCGCCTGTAGCTCCGGCATCAGTGTTGTCCTCCGAAGCCAAAACAACCCAATGCCCAGATTGCAACATAAAAGAATCACCCCAGCCTT CCGCCGCATCACCCGCTTCTACTACGTCGCCGACCTCTGATGACGACGCGTGCCACATGATATGGTGCGGAGAAGGAGAGTGCAAAGCAAATGAGAATGG GAGATCAGGTGGATACCACTGCCAGTGCCACAACGGTGCCAGCAATATGTTCAACAACGCTTCTTGGGCTTGCTTCAAACCATGTTCGCTTGGATCAGAT TGCTATAGTATCCCAACTTGTCCCCAGAACCTCCAATCACCTCCTCCGAACACTGTCGCTGCTGCTCCTCCGCCGAATAACGGTAGTTAA
AA sequence Show only first row Show all	>Lus10025761 pacid=23177626 polypeptide=Lus10025761 locus=Lus10025761.g ID=Lus10025761.BGIv1.0 annot-version=v1.0 MDSQLGSFALASFLIISLQGLTILSTSAAPTVTNGFLGGNFLGDLVCEFTDCGNGKCKAASKGLGGFECECDPGWKTHKAAPYTFPACILPNCSVDLGCD KTAPAPVAPASVLSSEAKTTQCPDCNIKESPQPSAASPASTTSPTSDDDACHMIWCGEGECKANENGRSGGYHCQCHNGASNMFNNASWACFKPCSLGSD CYSIPTCPQNLQSPPPNTVAAAPPPNNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14746			unknown protein		Lus10025761 [exp]	0	1
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	2.0	0.8419
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	2.8	0.8634
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10004439 [exp]	6.0	0.7175
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	6.2	0.8273
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	7.2	0.8273
AT4G19570			Chaperone DnaJ-domain superfam...		Lus10028524 [exp]	7.3	0.6172
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	8.1	0.8273
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	8.8	0.8192
					Lus10011218 [exp]	9.5	0.8183
AT1G14550			Peroxidase superfamily protein...		Lus10024206 [exp]	9.8	0.6892

Compare expression of checked genes

Lus10025761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.