Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 266 / 7e-86 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 186 / 1e-55 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 176 / 2e-51 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035901 [exp] 555 / 0 AT1G08510 269 / 7e-87 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 523 / 0 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 518 / 0 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 281 / 3e-91 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 281 / 3e-91 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 213 / 5e-65 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 213 / 7e-65 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 205 / 4e-62 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 201 / 1e-60 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G177900 [exp] 298 / 2e-98 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 296 / 8e-98 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 275 / 5e-89 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 275 / 5e-89 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 273 / 3e-88 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 232 / 1e-72 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 222 / 6e-69 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 213 / 3e-65 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 209 / 8e-64 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 173 / 2e-50 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10025762 pacid=23177469 polypeptide=Lus10025762 locus=Lus10025762.g ID=Lus10025762.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTCGCAAGCACTGTAATGTTTAGCTCCAATGTAAAATCCAAGTCCCTGCCCCTCGGCTTGGGGTCAGGCCGAAGACCACGGGGAGGTGTAG TCTTCGGCCTTGTAGGGAAGCCAGGTGCCGTGGCGAGTACTGCTACCACCAGTATTCTGTCGCTAACCAAGACCCTCTCGTTGCCGCCTACTCCAATGAC GACAACTACTCACGACGATGACATTGATCATCGTCGTGTTATAGTCGACACTGGAAGATTGAACGGACTGCTCAATTTCGCGGTCGAAACCGGGGTGCAG AACGGGCTGGTTTACAGGCAACGTGTTATTGTCAAATCCTTCGAAATCGGGCCGGACAGGAAAATCACCATGGCTGCATTGATGAACCATTTACAGGATA CGTCCCTGGGCCATTGTTCAAGAATGGGGATAGTGGCAGGTGGGTTTGGGGGGACTTCCTACATGAGAAGAAACAATCTTTGCTGGGTTATCACTTCTAC ACAAGTGACGGTGAATCGCTATCCTTCTTGGGGAGAAGCGATCGAGCTGCAACACTGGTTTTATGAGTCTGGGAAGAACGGGCTGGGTAATGATTGGCTT ATCCGTGACGCCAAGTCTGGAGAAGTTTTAGTTCGAGCCACCAACGTTTGTGTGTTGATGAACACGGCAACAAGGAGGCTATCCAAGTTTGTGAAAGAAG TGAGAGACGAATTCGCGCCACAGTTCTTGAGGCTTTCGCAAAGCGTTGCTCCGAGAGATGAGCGCAAAATACCGCGCCTGGACTCTGAATCCGCACATAA TATTCGAACATCTATACAGCCTGGTTGGTACGATTTGGATATCAATAACCACGTCAGTAACATCAAATACATCGACTGGATCATTGGGGGTGCTCCGCGC TCGATACTGGAGAGTCGAGAACTTTGTGGGATGACGTTGGAATACAAGAAAGAGTGCAGGATTGACGATGCTGGACTTCAGTCGATGTCCAAGATAGCGG GAAAGACCTTCGACGATCGTGTGGAATTGGAGCATTTGCTTTGTCTGGACGATGGTTCGGAAATCATGAAGGCTAGAACTATCTGGCGTTCTAAATATGA TCCAACAACTTCGTCTTCAGCTGCTGCTGCTCTTCCATTTCCCACAATCTAA
AA sequence Show only first row Show all	>Lus10025762 pacid=23177469 polypeptide=Lus10025762 locus=Lus10025762.g ID=Lus10025762.BGIv1.0 annot-version=v1.0 MASLASTVMFSSNVKSKSLPLGLGSGRRPRGGVVFGLVGKPGAVASTATTSILSLTKTLSLPPTPMTTTTHDDDIDHRRVIVDTGRLNGLLNFAVETGVQ NGLVYRQRVIVKSFEIGPDRKITMAALMNHLQDTSLGHCSRMGIVAGGFGGTSYMRRNNLCWVITSTQVTVNRYPSWGEAIELQHWFYESGKNGLGNDWL IRDAKSGEVLVRATNVCVLMNTATRRLSKFVKEVRDEFAPQFLRLSQSVAPRDERKIPRLDSESAHNIRTSIQPGWYDLDINNHVSNIKYIDWIIGGAPR SILESRELCGMTLEYKKECRIDDAGLQSMSKIAGKTFDDRVELEHLLCLDDGSEIMKARTIWRSKYDPTTSSSAAAALPFPTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025762 [exp]	0	1
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	2.4	0.8527
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	4.7	0.8341
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	7.5	0.8303
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	7.7	0.8048
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	8.2	0.8293
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	10.0	0.8282
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	11.5	0.8002
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	12.6	0.7917
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	13.7	0.7791
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	14.1	0.7765

Compare expression of checked genes

Lus10025762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.