Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80420 292 / 4e-97 ATXRCC1 BRCT domain-containing DNA repair protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035899 [exp] 584 / 0 AT1G80420 333 / 4e-113 BRCT domain-containing DNA repair protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G178100 [exp] 368 / 1e-126 AT1G80420 339 / 2e-115 BRCT domain-containing DNA repair protein (.1.2.3.4) Potri.005G182500 [exp] 43 / 0.0004 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10025764 pacid=23177580 polypeptide=Lus10025764 locus=Lus10025764.g ID=Lus10025764.BGIv1.0 annot-version=v1.0 ATGAGTTCTGGAGGTAGCGGCGGCAAGAAGCGAAGTCTCCCTTCCTGGATGAGTTCAGACGACAATGCCACTGGAGAGGACGGGCGTACCAACCCAAAAA GCGGCAACAAAGACAAAGGCGGCAGTAGCCCTTTACCCACCAAAGGTTCTGCAGGACCCAGTTCAAGTTCGCCAACATTCTCTAAGCTTTTGGAAGGGGT GGTGTTCGTATTGTCCGGGTTTGTTAATCCAGAACGAGCTACGTTACGGTCACATGCGCTGGAAATGGGTGCCGACTATCGACCTGACTGGGGCTCAGAC TGTACTCTCTTGATTTGCGCTTATTCAAATACTCCCAAGTTTCGTCAAGTTGAGTCCTTATGCGGTACTATTGTCAGGAAGGAGTGGGTATTAGAGTGTT ATACCCAAAAGAGGCTCCTTGAAATTGATAGCTATCTCATGCACGCTGGGAAGCCCTGGAGAAAGAGCCGGGATTCTGCTGCTGAAAGTAGTCATGAAAA GGAACCTCCTCGTAAAAAAATTGCAAAAGAAGCTGAAAGTTTACCACATTCAGGGCCATCTGCCTCTGCATCGTCAAATAGTAAGACTTCTAAGACCGCT AAGGAGAAATTTCCCAGTTCTGAAGTGAAGAAATGGGCAGTCGACGATCTTAACAAAACCATCTCGTGGCTAGAGAGTCAAGATGAAAAACCAGAGCCAA GTGAGATAAATCAAATAGCAGCAGAAGGTATCATAATTTGCTTACAAGATGCTATTGATTCCATTGAGCAAGATCAGGATATGTGCAAAATTGCGAAGCA GTGGAATGTTGTGCCCCGTGCAATTGAGGAGCTGGTAAATCTTTCAGGTGGTAGAAATGAGTCCGCCGTTTGTCAAAGGGAAGATCTTTGTAAACAAGCC AAAGAGTTTAAAGAAACGTACGAGGTTGCACTTAGAAGTTCAGAGCACAACTCCAACACACAGATCAAAAGGATGAAGAACAGTGCAGGAGGAGTTAAGA ATGGGAAAGGGAAACCCCGTGATGGATATGACAGCGATGAAACTATTGAGATGACTGAAGAAGAAATTCGCGTTGCCTCTAAATTATGTGCGTAG
AA sequence Show only first row Show all	>Lus10025764 pacid=23177580 polypeptide=Lus10025764 locus=Lus10025764.g ID=Lus10025764.BGIv1.0 annot-version=v1.0 MSSGGSGGKKRSLPSWMSSDDNATGEDGRTNPKSGNKDKGGSSPLPTKGSAGPSSSSPTFSKLLEGVVFVLSGFVNPERATLRSHALEMGADYRPDWGSD CTLLICAYSNTPKFRQVESLCGTIVRKEWVLECYTQKRLLEIDSYLMHAGKPWRKSRDSAAESSHEKEPPRKKIAKEAESLPHSGPSASASSNSKTSKTA KEKFPSSEVKKWAVDDLNKTISWLESQDEKPEPSEINQIAAEGIIICLQDAIDSIEQDQDMCKIAKQWNVVPRAIEELVNLSGGRNESAVCQREDLCKQA KEFKETYEVALRSSEHNSNTQIKRMKNSAGGVKNGKGKPRDGYDSDETIEMTEEEIRVASKLCA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	0	1
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10038217 [exp]	1.4	0.8473
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	3.5	0.8288
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	3.5	0.8315
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	11.7	0.8358
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	14.3	0.8125
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	14.9	0.8229
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	18.4	0.8274
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	20.1	0.8209
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	20.6	0.8184
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	22.9	0.8052

Compare expression of checked genes

Lus10025764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.