Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60560 1086 / 0 SWIM zinc finger family protein (.1.2) AT4G13970 575 / 0 zinc ion binding (.1) AT1G12663 46 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035898 [exp] 1368 / 0 AT1G60560 1123 / 0.0 SWIM zinc finger family protein (.1.2) Lus10003970 [exp] 571 / 0 AT4G13970 964 / 0.0 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106000 [exp] 1135 / 0 AT1G60560 1192 / 0.0 SWIM zinc finger family protein (.1.2) Potri.006G245800 [exp] 643 / 0 AT1G60560 649 / 0.0 SWIM zinc finger family protein (.1.2) Potri.014G054600 [exp] 597 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.002G140800 [exp] 576 / 0 AT4G13970 940 / 0.0 zinc ion binding (.1) Potri.003G056450 [exp] 56 / 3e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [flax] [poplar] SWIM SWIM zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025765 pacid=23177496 polypeptide=Lus10025765 locus=Lus10025765.g ID=Lus10025765.BGIv1.0 annot-version=v1.0 ATGGAGAATAGGAGGTCGACAGCAGCAGTATTTGTGTTGGGTTTGGTGGTCATTTCGATAGGCTTACTGCCTCAGCAGTCCATGGCTTCTAATTTCAACA CTTGTTACAGAGATTGCTTCCTTCTGTGCGCTATTACCGGCAACTCTCTCGCTTCTTGCGCCGCCAACTGCTTGAAAGGCTGCATCTTTCAGCCTCCATC TCCAGTTTCCAACACAGGAGGCCAAGAGATGGCGAAATCCAAATCTCACTACTTCTGCAAACTTGGATGTGCTTTCTCCCTCTGCTCCAATTTCAGCTCC CGAAATGACCCTAGGCTCGTCGTGAAAGCAGCATCGGGCAATCTTCCTGTTCAAGATCCTCCAGAGGTGGAATTTTCTGCTGCTGATTTGAGTTGGACCA AGTTTGGAACTGCTGATCATTACGATGATGTTGCTGTAATTCCTTATAACCGAGTTGATACATTTATAATTGGGGAATGCACCAATGTTGAATGTCCAAC ACGCTTCCATATTGAAAGGGGGAGGAAACGTTCTAAGGGCAGCTTGAAGGAGTATAAGAATGACGAATATTTGGAGTATAAACTCTATTGGTGCTCATTT GGACCTGAGAATTATGGGGAGGGTGGAAGCATATTACCTAGTCGTAGATATCGGCTTAATACTCGAAATCGTGCTGCTAGGCCTCAGTCCATGCGTGGCT GCACATGTCATTTTGTGGTGAAGCGTCTATATGCTCTTCCATCACTTGCACTCATTGTATATAACGAAAGGCGGCATATAAATAAATCAGGGTTTGTCTG CCACGGGCCACTTGATAAAGATGCCATTGGCCCCGGAGCAAAGAAAATCCCATATATTTGCAATGAGATTCAGCAACAAACGATGTCCATGATTTATCTA GGGATCCCAGAGGAGAATGTGTTGGAGAAGCACATTGAGGGTATTCAAAGATATTGTGGTGCAAATCAAAAAGTCGATAGCCTTGCTTCTACATATGTGC AAAAGCTTGGCATGATTATCAAACGTTCAACTCACGAGTTAGATTTAGACGATCAGGCCAGTATCAAGCTGTGGGTTCAGCGCAATAAGAAATCAATTTT CTTTTATCAAGACAATTCTGGGACGGATGCTTTCGTTTTGGGCATTCAAACAGAGTGGCAGTTGCAACAAATGATAAGATTTGGTCATCATAGTCTTATT GCTGCTGATTCAACATTTGGCATTAAGAGACTCAAGTACCCATTAAGCACGCTGCTTGTGTTCGACTCAAGGCAACATGCACTTCCTGTTGCTTGGATCA TCACTCGTAGCTTTGCAAAACAAGATGTTGCAAGATGGATGAAGGCTTTACATGAGAGAGCTTCATCTATGGAGCCCGGATGGAAGATTAATGGATTTAT AATTGATGATGCTGCAGCAGAGGTTGATCCCATAAGGGATATCTTCAGCTGCCCTGTGCTATTCTCACTCTGGCGTGTACGTCGATCATGGCTGCGAAAT ATTGTTAGAAAATGCAGCGGCATAGAAGTTCAGCGCGAGGTTTTTAAACGTCTGGGGAGAATTGTTTATAGTATTTGGAGTGGAGTAGATGCTTTGACTG CTTTGGAAGAATTAACCCGTGATTTCATTGATCAAACTTTATTCATAGAGTACTTTGAAGCCTCATGGATGCCAAAGATAGAAATGTGGCTTTGTATGAT GAAAACACTTCCTCTGGCAAGCCAGGAGGCTTCTGGTGCGATAGAGGCTTATCATGTAAAGCTAAAAGCAAAATTGTTTGATGATTCACATCTTGGTGCT CGCCAAAGAGTAGATTGGTTAGTTCACAAGCTGACAACAGAATTGCACTCTAGTTACTGGGTGGATAGGTATGCAGATGAAAGTGGTTGTTTTAATAATG TGAAGGAACAATATGTATGTTCGACGTCATGGTACAGAGCACTGCAAATCCCTGATTCTGCAGTGTCATTGGATGAGGAAGACAAGGAGGTGTTTGCCAA GGTCTCAAGTGAAAAGGATGGAAAAACAGGCCATACAGTATGGAATCCCGGGTCCGAATTTGCGTTTTGTGATTGTACATGGTCATTACGAGGAAACCTG TGCAAGCATGTGATCAAGGTGAAGATGATGCTACAATCTGAAGAAGGTAGTAGTTCAATGTCATTCCAGTCGCTGGAAAAAGTATTGCGGGAGATGTGGG AAACGCCAATGGACGGTACAGTTGAATTAGATGTTTGCATGGCGTGGGCTGTGAAGATGGTTGATCAAATGAAGCAAGCAGTGGAACTGAGTGGCTCAAA TGATATTGGTTCAGTGGTAAATAGCAGGATGGCATTGAAGTGGGGTTGTAAGAAAGGGAGAACATCTGTTGGCATTCCTTGTCTTCCAAAGAGTGGTTCA AACTCTACAAGAAGTAAAATGAGCCGAAAGCGTAAGAGACTGCGTTGTAGGTAG
AA sequence Show only first row Show all	>Lus10025765 pacid=23177496 polypeptide=Lus10025765 locus=Lus10025765.g ID=Lus10025765.BGIv1.0 annot-version=v1.0 MENRRSTAAVFVLGLVVISIGLLPQQSMASNFNTCYRDCFLLCAITGNSLASCAANCLKGCIFQPPSPVSNTGGQEMAKSKSHYFCKLGCAFSLCSNFSS RNDPRLVVKAASGNLPVQDPPEVEFSAADLSWTKFGTADHYDDVAVIPYNRVDTFIIGECTNVECPTRFHIERGRKRSKGSLKEYKNDEYLEYKLYWCSF GPENYGEGGSILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYALPSLALIVYNERRHINKSGFVCHGPLDKDAIGPGAKKIPYICNEIQQQTMSMIYL GIPEENVLEKHIEGIQRYCGANQKVDSLASTYVQKLGMIIKRSTHELDLDDQASIKLWVQRNKKSIFFYQDNSGTDAFVLGIQTEWQLQQMIRFGHHSLI AADSTFGIKRLKYPLSTLLVFDSRQHALPVAWIITRSFAKQDVARWMKALHERASSMEPGWKINGFIIDDAAAEVDPIRDIFSCPVLFSLWRVRRSWLRN IVRKCSGIEVQREVFKRLGRIVYSIWSGVDALTALEELTRDFIDQTLFIEYFEASWMPKIEMWLCMMKTLPLASQEASGAIEAYHVKLKAKLFDDSHLGA RQRVDWLVHKLTTELHSSYWVDRYADESGCFNNVKEQYVCSTSWYRALQIPDSAVSLDEEDKEVFAKVSSEKDGKTGHTVWNPGSEFAFCDCTWSLRGNL CKHVIKVKMMLQSEEGSSSMSFQSLEKVLREMWETPMDGTVELDVCMAWAVKMVDQMKQAVELSGSNDIGSVVNSRMALKWGCKKGRTSVGIPCLPKSGS NSTRSKMSRKRKRLRCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	0	1
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	1.0	0.8694
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10010079 [exp]	2.8	0.8088
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	4.0	0.8588
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	5.7	0.8485
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	10.6	0.8461
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	12.6	0.8269
AT3G26350			unknown protein		Lus10011406 [exp]	13.0	0.7960
					Lus10024697 [exp]	13.3	0.7994
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	13.3	0.7953
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	13.6	0.8214

Compare expression of checked genes

Lus10025765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.