Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16000 109 / 5e-28 MFP1 MAR binding filament-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179600 [exp] 151 / 1e-42 AT3G16000 446 / 3e-146 MAR binding filament-like protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025768 pacid=23177676 polypeptide=Lus10025768 locus=Lus10025768.g ID=Lus10025768.BGIv1.0 annot-version=v1.0 ATGATTTCGTCTTTGCACAGGGACTTACAACAGGTCGAGCAGCAAATATTGGAAGATAAGGAGGCAAGAAAAGTTCTTGAATCGGATATGGAAGAGGCCA CGACCTCCCTTGCCGAGATGAACAGGAATGCACTCGCTCTTTCCAGAGAACTTGAGATGGCTAGGTCAACAATTGCAAGCCTTGAGGATGAAAAACATTT ACTCTACAAGTCAGTTTCGGAGCATAAGAATGCAGCCATGGAGGCCAAAGAGAATATGGAAGATGCTCATAACATGGTTCTGAGGCTGGGGAAGGAAAGG GGAAGTCTTGAGAAGAAAGCCAAGAAACTAGAAGAGGCGTTAGCTTCTGCCAAGGGTGAAATTTTGCGATTAAGGAGTAAAATGAATTCGGCAAAGACAG CTGCTGTTAGTGATCAGAAACCTGTGGTTAAAAGTGAGAAGCAGCCTTCTGTGAAGGTTGATGAAGAAGCAGGAGAAAAGGTCAGCGTTAGTAGTGCAAA GAGAAGCACCACCAGAAGGAAAAGAACTACTTCTCAGGAATAG
AA sequence Show only first row Show all	>Lus10025768 pacid=23177676 polypeptide=Lus10025768 locus=Lus10025768.g ID=Lus10025768.BGIv1.0 annot-version=v1.0 MISSLHRDLQQVEQQILEDKEARKVLESDMEEATTSLAEMNRNALALSRELEMARSTIASLEDEKHLLYKSVSEHKNAAMEAKENMEDAHNMVLRLGKER GSLEKKAKKLEEALASAKGEILRLRSKMNSAKTAAVSDQKPVVKSEKQPSVKVDEEAGEKVSVSSAKRSTTRRKRTTSQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025768 [exp]	0	1
AT3G61870			unknown protein		Lus10012617 [exp]	4.0	0.9289
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	7.3	0.9229
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	7.9	0.9212
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	10.5	0.9149
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	11.0	0.8451
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	11.0	0.9177
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	14.4	0.9037
AT4G13220			unknown protein		Lus10022819 [exp]	16.0	0.8957
AT4G13220			unknown protein		Lus10011887 [exp]	19.0	0.8940
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10036431 [exp]	19.4	0.8684

Compare expression of checked genes

Lus10025768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.