Plant FIBer expression Database

Lus10025769 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16000 164 / 4e-44 MFP1 MAR binding filament-like protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G179600
[exp]
311 / 5e-98 AT3G16000 446 / 3e-146 MAR binding filament-like protein 1 (.1)
PFAM info
Representative CDS sequence
>Lus10025769 pacid=23177545 polypeptide=Lus10025769 locus=Lus10025769.g ID=Lus10025769.BGIv1.0 annot-version=v1.0
ATGAGTTTTGCGGCAAGAGGCGGTTGCCTTCTACAACCTCAATGTGTCCCATCTTCTTCTCCGCAGTCTTTATTTGTCTGTGCAAACAATGGCAATGCAA
TAGCAGGGTTCAAGAGCAAGAGAAGAGGCGCCGTCGGGGTTAGGTGTCTGCCGTCAGAGGACCCGAAAGACGCACTCTATGGCAACAAGAGAGCGGTTCT
GTTAATGGGCGCCTCAGTACTTCCATTCTTGCACCTCAGGGCCCGAGCTTTTGAAAGTCTCGTCGCTGAGATTCAACGATTTTCTTATGTCCTTTCAGAG
GAAAATGATCTGGGGGCAACGAACCAGGTCGAAGAGCAGCTACCCATACAGAAATATACAGGACCGGCTCCATTTTTCTCTTTCCTGAATGGGCTTGGCA
TTGTTGGTATTGGCATACTTGGTGCACTCTATGCATTGACCCGGAAAGAAAAGAAAGCTGCTGATTCAACTATACAATCAATGGCTGTTTCACTTAGAGA
AAAGGAAGCTGATATCAAGTCATTAAAGAAGAACTTTGAACTACAGCTACTAAACGAACAGGAAGAGCGAACAAAGCAGCTTAACATGGCAAAGGAAGAG
CAGCAGACTTTAGCTAATCAATTGAACGTAGCCAACAGTACAATTACAGGTTTGGGGAAGGAGCTAACGAAGGAGAAAAAGGCCATAGAGGAGCTCAAAG
TTTATATCGAGGATCTAGAAGGAAATCTATCAAAGGCTGCACAGGAGAATAATGCTCTACAACTAGAATTGGAGGAAATGCGTAGCTCTATTGAGAGGTT
ACAAGAGAAAGTTAAGCTACTCAGTTTAGATCTAAAGCAAAAGGAAGATGTGGTTCAATCTCTCAGCTCTTCACTGGAGGATAAGGAGTCAGAGTTGATG
AATTTGAAGAATTCTTATAAGGAAATGGAGAATGACTTGTCTAGAGCAAACACAGAAATCAATGGTTTGAAAGATGAAATCTTGCAACATAAGCAGCAGC
TGGAATTGAAGAATTCTCTGGTGGATCAACTAGAATCAGGAGTTAGTTCTCTGACCTTAGAGAGAGATGAATCTAACAAGAAGCTGGGTACTATCCAGGA
AGAGTATAATGACCTCAAATTTTCCTCTGAAAAGAAAGCTGCTTTTGATGCTAAACTGTTGGGAGAAAGAGAAGCAGAGATTCATAGGTTAACTGAGAGC
CTTAAGCTTGCTATCAGTGAGGCAAAAAGAAAAGAACAAGTGATTGAAGATTTAACTGGAGAAATGGAAGAACTAAAGAAAACACTTGAAGCTGAATCAA
GCAATGCTCAGACATTAAAGCAAGAGCTCCTCATGTCTCAGAAAGCTCTGGATAAGCTGCGGAATGATGCTTCGGATCTGGGGAGGAATTGA
AA sequence
>Lus10025769 pacid=23177545 polypeptide=Lus10025769 locus=Lus10025769.g ID=Lus10025769.BGIv1.0 annot-version=v1.0
MSFAARGGCLLQPQCVPSSSPQSLFVCANNGNAIAGFKSKRRGAVGVRCLPSEDPKDALYGNKRAVLLMGASVLPFLHLRARAFESLVAEIQRFSYVLSE
ENDLGATNQVEEQLPIQKYTGPAPFFSFLNGLGIVGIGILGALYALTRKEKKAADSTIQSMAVSLREKEADIKSLKKNFELQLLNEQEERTKQLNMAKEE
QQTLANQLNVANSTITGLGKELTKEKKAIEELKVYIEDLEGNLSKAAQENNALQLELEEMRSSIERLQEKVKLLSLDLKQKEDVVQSLSSSLEDKESELM
NLKNSYKEMENDLSRANTEINGLKDEILQHKQQLELKNSLVDQLESGVSSLTLERDESNKKLGTIQEEYNDLKFSSEKKAAFDAKLLGEREAEIHRLTES
LKLAISEAKRKEQVIEDLTGEMEELKKTLEAESSNAQTLKQELLMSQKALDKLRNDASDLGRN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16000 MFP1 MAR binding filament-like prot... Lus10025769
[exp]
0 1
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Lus10003599
[exp]
1.4 0.9146
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Lus10035091
[exp]
2.8 0.9009
AT4G00560 NAD(P)-binding Rossmann-fold s... Lus10040928
[exp]
3.5 0.8904
AT5G03940 SRP54CP, CPSRP5... SIGNAL RECOGNITION PARTICLE 54... Lus10021346
[exp]
5.7 0.9234
AT4G30825 Tetratricopeptide repeat (TPR)... Lus10036601
[exp]
8.4 0.8977
AT5G11670 ATNADP-ME2 Arabidopsis thaliana NADP-mali... Lus10006036
[exp]
8.9 0.8938
AT3G26570 ORF02, PHT2;1 phosphate transporter 2;1 (.1.... Lus10006210
[exp]
13.1 0.8832
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Lus10009311
[exp]
14.1 0.8616
AT3G04760 Pentatricopeptide repeat (PPR-... Lus10014660
[exp]
15.2 0.9064
AT1G12800 Nucleic acid-binding, OB-fold-... Lus10008475
[exp]
16.1 0.9000

Lus10025769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.