Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11460 92 / 2e-21 Protein of unknown function (DUF581) (.1) AT1G79970 61 / 5e-11 unknown protein AT3G22550 51 / 2e-07 Protein of unknown function (DUF581) (.1) AT2G25690 49 / 9e-07 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035894 [exp] 399 / 5e-142 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 82 / 8e-18 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 70 / 1e-13 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 69 / 2e-13 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 49 / 1e-06 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 49 / 1e-06 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179700 [exp] 155 / 4e-45 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 118 / 1e-30 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 62 / 6e-11 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 59 / 5e-10 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 57 / 2e-09 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 56 / 4e-09 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 56 / 8e-09 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025770 pacid=23177609 polypeptide=Lus10025770 locus=Lus10025770.g ID=Lus10025770.BGIv1.0 annot-version=v1.0 ATGGATGATTCTGCGTCAAGGCCTCATTTCCAATCTAATGTATTAAGCCTCACAACAAGCAGCTCCTTCTCCAAGCTTCGTGGTTTCTTTACAAGATCTA GTTCTAAAGGCTCATCTGAATTCGAGTCTGTTAGAAGCCCGACATCTCCTCTAGATCTCATTTTCCCCTCGAATCTTAGCAACCCGTTTAACCGCAAGTC ACCAAGGACATCCCAGGGTGGCCATAAGAAACAATGGGATAGCTGCAAAGTAGGTCTTGGCCTTGTCAAGTTGCTTTTTGAGGAAACACAGCAAAGTGGT GAGCTTCTGAAATCCCCAAAGAGGAAGAATGTGATATTTGGATCACAGATCAAGATTGGTGACTCTAAGAGATCAATTTCTTTACCGAAAAACTACGTGA TCTCACTTCCATCTCAATCTGGAAGTCCCAAGGGTCTGTTACGTAAATCAATTTCTGTCTCTGGCGCTGAGGAAGAAGACCTTATGCCGCTGGAAGATTC TTCTCTAAGCAGCTTGACCAGAATACCGAGCTTCGGTTCGAAAGCATGTTTGCCAGCATATATGTCTACTTCCACATCAAGTTTGCCTGTGGTTGTGAGC AGAAGTTTGAAGAAGAACCATTCCTTAGACAATAAGCCAACATCTGTGCCTATACCGATTCTTCCCAGCCAACGAGAGATTGAGCTCTCTGAAGATTATA CTTGCATAATCTCGTATGGTCCCAGTCCTAAAACAACTCATATTTTTGGTGACTGCATTTTAGAACCCTCGCTAGTGAGTTGA
AA sequence Show only first row Show all	>Lus10025770 pacid=23177609 polypeptide=Lus10025770 locus=Lus10025770.g ID=Lus10025770.BGIv1.0 annot-version=v1.0 MDDSASRPHFQSNVLSLTTSSSFSKLRGFFTRSSSKGSSEFESVRSPTSPLDLIFPSNLSNPFNRKSPRTSQGGHKKQWDSCKVGLGLVKLLFEETQQSG ELLKSPKRKNVIFGSQIKIGDSKRSISLPKNYVISLPSQSGSPKGLLRKSISVSGAEEEDLMPLEDSSLSSLTRIPSFGSKACLPAYMSTSTSSLPVVVS RSLKKNHSLDNKPTSVPIPILPSQREIELSEDYTCIISYGPSPKTTHIFGDCILEPSLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	0	1
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	2.8	0.8509
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	3.0	0.8041
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	4.5	0.7771
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	4.7	0.7737
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	6.8	0.8062
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	9.5	0.7701
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	9.5	0.7900
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	9.5	0.7862
AT2G16365			F-box family protein (.1.2.3.4...		Lus10040438 [exp]	9.8	0.7589
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	11.3	0.7980

Compare expression of checked genes

Lus10025770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.