Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14920 393 / 2e-129 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT5G05480 247 / 2e-73 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017926 [exp] 450 / 7e-151 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025775 [exp] 394 / 4e-130 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017437 [exp] 240 / 2e-70 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 195 / 2e-55 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007518 [exp] 146 / 8e-40 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G109700 [exp] 491 / 9e-167 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.008G072400 [exp] 257 / 2e-77 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.010G185100 [exp] 252 / 1e-75 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [flax] [poplar] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Lus10025771 pacid=23177436 polypeptide=Lus10025771 locus=Lus10025771.g ID=Lus10025771.BGIv1.0 annot-version=v1.0 ATGATCACTACTCCTTTCTTCTTCCCTTTACTCTTCTTGTTTTTCCTCTGCATTTCCGACCCAAACAATGCAGCAGCTACCACCCGCCTCAATACCCGCC TAAAACATACTGCTAGTACTACTATTCCTAACTCAAACAAGCTGTCACATTCTCCCAAACCAAATGTTCTGTTCCAAGTCACTAAACCCATCGACGTCCC CAATACCGTGCCTTGCAAGCAACTCCTCCTCCAACACCAATTCGGCTCCACCGAGGGTGAACCTTCCGTCATTGTCAACTATGCTGGCCCGCCTTCCCAC TGTCATCCCTCCTCCAACGATTTCTCCAAGATTGTATTGGAATGGTCAGGGACCTGCAGCGGATCCCAAGAGGACTCCGTTTTCGGAGTTTGGCTCGGCG GGGTGGAGCTCCTTAGGGGCTCCCCTGCCCAACCGCAACAACACAGTGGTTCCATTGCTTGGAAAGCACAAAAGGACATCACTAGGTACTCTTCCTTGCT GCTCAAGAAAGATGCTCAGAAGCTTGCAGTTTTCCTCCGCAACAAACTTGACGACAGCTACAGGTTCGGCGTTTATCATGTCTCGGTTAGCATCTCATTT TATCCAACAGAGGGTAAAATGGGGACTAAGCCTGCCAAAATGAATTTGGGAATGGGAAGCGAATCCGGAGCGGACTTGATTCTTCCCATTTCCCAGAAAA ACCTCCAAACCAAGGATGGATTATGGTATCAAATCAAGAACTCGACGGACCAGAAGCGGGTGGCATTCGAGATTCCTCGGAACGCTTACAGAGCTGTGCT CGAGGTATGCGTTTCCTCCCACAACACTGACGAATATTGGTTCTCTAATTATCTCCCCGAGTTCTACAACTCCAACCAATTTGTGGACGTGTACAAAAAC GGACCGTTTCGAGATGTAACGGTCGGGCTCGATGACGTCCAAGTCGGGGCGATTTGGCCTTACCCTGTTATTAACGGGGCAGGGTCAGATATGTGGAACC CGGTCGCCAGCATTCGTAGCTTCGACCTACCTTCCTACGACGTCGAATTGACTCCATTCTTAGGCAATCTACTAGACGGTCGGGCTCATAATTTGAGCTT CGGAGTGGGGAATGCAATCGACGTGTGGTATGTCGATGCCAACTTACACCTATGGTTAGACCACAAAAGCGAGAAAACTGAGGCGAAACTAGTGGCAAAC CATAGCCAGCCGCTTCATCTGGTATCAAAGTTCAGCATGATGGGAGTGAATGGGGAATCGTCAATCAAAGCAGATAGGATGATTTCTTCACAAGGATGGG TAAAATCATCATATGGTAACATCACAGTTCAGGTTACCCAGAACTTGTCGTACACAAACTACATCGATGTCGAGTTTGACAGCCATACCGCAGGCAATCC TGCTTTCGCTGATCGAGTGGAACAGTTGATTCTTTGCAACGACAGCGTTTCGTTCGTTAAGGACGACGACTCCTCGACTGTTATGTTGTCGATGAAGAAT TTTAGTGTGGCCAGTGTTCACGAACAAGTGGTGATGGAAGGAGAAGGGAAGGCCGTGGATACGAGTAACATCACGTTGGGGTATAGTGATGTGAAAATTG TGCACGAGAAGAAGTCTTCGGGTTCTGAAATTTGGAAGAAGAGCAGCTTGAAAGATGAGCAGAGTGGGAGCAGCGTTTGGACTGTGAAGAACTTAACTTG GTTCAGTGCGTTACAGGATATGAAGCAATCATACAATTATTATGTTGATGGTGGTCAGAAGAAGAATCGTGGTGGTAGTAATAAGGGAGGGTGTTATTTC AGGAACATACGGAGCATCAACGCTACTGTCCTTCATGACGATCAAGGAAGCAAGTGTCTCTAA
AA sequence Show only first row Show all	>Lus10025771 pacid=23177436 polypeptide=Lus10025771 locus=Lus10025771.g ID=Lus10025771.BGIv1.0 annot-version=v1.0 MITTPFFFPLLFLFFLCISDPNNAAATTRLNTRLKHTASTTIPNSNKLSHSPKPNVLFQVTKPIDVPNTVPCKQLLLQHQFGSTEGEPSVIVNYAGPPSH CHPSSNDFSKIVLEWSGTCSGSQEDSVFGVWLGGVELLRGSPAQPQQHSGSIAWKAQKDITRYSSLLLKKDAQKLAVFLRNKLDDSYRFGVYHVSVSISF YPTEGKMGTKPAKMNLGMGSESGADLILPISQKNLQTKDGLWYQIKNSTDQKRVAFEIPRNAYRAVLEVCVSSHNTDEYWFSNYLPEFYNSNQFVDVYKN GPFRDVTVGLDDVQVGAIWPYPVINGAGSDMWNPVASIRSFDLPSYDVELTPFLGNLLDGRAHNLSFGVGNAIDVWYVDANLHLWLDHKSEKTEAKLVAN HSQPLHLVSKFSMMGVNGESSIKADRMISSQGWVKSSYGNITVQVTQNLSYTNYIDVEFDSHTAGNPAFADRVEQLILCNDSVSFVKDDDSSTVMLSMKN FSVASVHEQVVMEGEGKAVDTSNITLGYSDVKIVHEKKSSGSEIWKKSSLKDEQSGSSVWTVKNLTWFSALQDMKQSYNYYVDGGQKKNRGGSNKGGCYF RNIRSINATVLHDDQGSKCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	1.4	0.9490
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	2.0	0.9355
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	2.4	0.9274
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	4.9	0.8953
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	8.7	0.9117
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	9.2	0.8769
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	9.4	0.8756
AT4G38960	CO		B-box type zinc finger family ...		Lus10042069 [exp]	9.9	0.7489
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	10.0	0.9051
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	12.7	0.8876

Compare expression of checked genes

Lus10025771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.