Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 224 / 2e-70 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT1G54060 100 / 2e-23 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT5G05550 93 / 1e-21 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G14180 95 / 3e-21 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 92 / 3e-21 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 84 / 1e-17 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G58630 79 / 2e-16 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 77 / 1e-15 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G44730 68 / 2e-12 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 62 / 1e-10 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035893 [exp] 568 / 0 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10033094 [exp] 219 / 7e-68 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10017725 [exp] 219 / 8e-68 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 200 / 4e-60 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025406 [exp] 128 / 4e-34 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 126 / 1e-33 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 93 / 3e-21 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 89 / 8e-21 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 72 / 1e-13 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179800 [exp] 367 / 2e-125 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 362 / 2e-123 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.018G075500 [exp] 245 / 1e-78 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G071300 [exp] 103 / 3e-25 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.T126206 [exp] 101 / 7e-24 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 100 / 2e-23 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 94 / 2e-21 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 93 / 3e-21 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.014G051200 [exp] 77 / 2e-15 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 76 / 4e-15 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10545 [flax] [poplar] MADF_DNA_bdg Alcohol dehydrogenase transcription factor Myb/SANT-like
Representative CDS sequence Show only first row Show all	>Lus10025772 pacid=23177650 polypeptide=Lus10025772 locus=Lus10025772.g ID=Lus10025772.BGIv1.0 annot-version=v1.0 ATGGATAAAAACTCGTATGAAGCTCCCCAGCAGGGATACAATCCTCCAAACCAGTACGGAAGTGAGGATGACGATGAGGAGGACGAGGAGGACGAGGAAC TCTCCATGGATGATGAACACTTGGGAGAGGAAGATGCTGGAGATGATAATCAAAACATTAGCAATATCCAAGGGGCAAGTAAAGATGTAGACAATGATGA GGATGAGGATGAGGATGATGGATTTTACGACGAAGCAGATGACAATGAGGATGCTGGGGTTGATAATGCTGATGTAGGCAGGCACCCGAAGAAGCGGAAG CTGATGAGCCTCTCATCAAGTTATGAATTTGCTCCACGTGTGCCACCATTGGTTCCTAGTGCCAAACCATTGCTTGTTGGTGGAAGAAATCCTCTTACTG ATTGGACCGAACAAGAAACATTTGCTCTATTAGATGCTTGGGGTGACAAGTTCTTGCAGCGTGGGAGGAAAAGTCTGCGTTCGGACGAGTGGCTAGAAGT TGCAGATAAGGTTTCAGAAGTATCCAAGATTGAGAGAACAGACACACAGTGTAAGAACCGTTTGGATACGGTGAAGAAGAAGTATAAGAAAGAGAAGGGT AGGATGGTTGCAGGTTCTTGTACTAGCAGCAGCTGGGTTTACTTCAAAAAGATGGACATGCTCATGTCACAGCAAGGAGGAGGAAGAGGACTTTCTTGTG GTTTGGATTCTGGGGAGTATGTATTCATGAATCCAAAAGTATATCTCAATCGTGCAAACGGGTTCGACGAGATGCGAGACAGTCCAGGAAACACGGAATC GGGCGACGATGACGATATTTCAGACGGGCTCCCACCAAAGAAGAGGTGGTGTCGTAGTAGAGGCCAAAATGAGGAGGAGGGATCTTCCTCTTTCCATTTG CTGGCTGATTCTATTGAGAGATTCAGTGAGATATATGAGAAGATTGAGACTAGTAAGAGGCAACAAATGGTGGAGCTAGAGAAGATGAGGATGGACTTTC ACAGGGATCTGGAAATGCAGAGAAGAGAGATCATGGAAAGAGCGCAGTTTGAGATGGCGAAAATCAGAGGAAGTGGACATGATGAGGAACAAGATACTTC TGGAGAAGATGCAAGTGCTTGA
AA sequence Show only first row Show all	>Lus10025772 pacid=23177650 polypeptide=Lus10025772 locus=Lus10025772.g ID=Lus10025772.BGIv1.0 annot-version=v1.0 MDKNSYEAPQQGYNPPNQYGSEDDDEEDEEDEELSMDDEHLGEEDAGDDNQNISNIQGASKDVDNDEDEDEDDGFYDEADDNEDAGVDNADVGRHPKKRK LMSLSSSYEFAPRVPPLVPSAKPLLVGGRNPLTDWTEQETFALLDAWGDKFLQRGRKSLRSDEWLEVADKVSEVSKIERTDTQCKNRLDTVKKKYKKEKG RMVAGSCTSSSWVYFKKMDMLMSQQGGGRGLSCGLDSGEYVFMNPKVYLNRANGFDEMRDSPGNTESGDDDDISDGLPPKKRWCRSRGQNEEEGSSSFHL LADSIERFSEIYEKIETSKRQQMVELEKMRMDFHRDLEMQRREIMERAQFEMAKIRGSGHDEEQDTSGEDASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10025772 [exp]	0	1
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	2.8	0.8435
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	3.5	0.8388
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10042133 [exp]	3.9	0.8386
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	8.8	0.8167
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	10.4	0.8092
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	10.4	0.8254
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	11.2	0.8223
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	18.9	0.7823
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	21.7	0.8055
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	23.1	0.7988

Compare expression of checked genes

Lus10025772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.