Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 874 / 0 Protein kinase superfamily protein (.1) AT1G09600 620 / 0 Protein kinase superfamily protein (.1) AT1G54610 602 / 0 Protein kinase superfamily protein (.1.2.3) AT1G57700 598 / 0 Protein kinase superfamily protein (.1) AT5G50860 596 / 0 Protein kinase superfamily protein (.1) AT1G03740 579 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 561 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 561 / 0 Protein kinase superfamily protein (.1) AT5G44290 558 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 542 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035892 [exp] 1107 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 662 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 654 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10031651 [exp] 637 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10033975 [exp] 637 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039836 [exp] 616 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 612 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 610 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018601 [exp] 601 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119400 [exp] 1098 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 1097 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G130000 [exp] 717 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 662 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 660 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 630 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 629 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 629 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 625 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 619 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025773 pacid=23177533 polypeptide=Lus10025773 locus=Lus10025773.g ID=Lus10025773.BGIv1.0 annot-version=v1.0 ATGGGTTGCCTGTGCTGTAAACCCTTTGCAATAGACGATGCCAAAGAAAGGCTCTCAAGTAAAGCCTCATCAGAGGTAAGGGTATCCAGGGCTGCGTCTT CAAGGAGGGAAGAAGTATATAGACCTAAAGAGAAATACGATAGCAACGATGGAAGAGAAATGTTAATTGGTAAGCAAATAATTGGATCAAGTAGGTTGCA TGTGAGTGAGAATGTTGATAAGAGAAGACCAAAGATGGAGTATGCTGTTGTGCGGCATCCAAGTATGGGTAGTATGCCAAAAGCAACTGAAGGGGAGCAG GTTGCTGCTGGATGGCCTTCCTGGTTAGCTGCAGTGGCTGGCGAAGCAATAAAGGGATGGGTTCCTAGGAAGGCTGATTCTTTCGAGAAGCTTGATAAGA TTGGCCAAGGAACCTATAGTAATGTCTACAGGGCTCGTGACCTGGATCAAAAGAAGATTGTTGCTTTGAAGAAAGTGAGGTTTGATAATCTTGAACCAGA TAGTGTTCGGTTTATGGCAAGGGAGATCAATATTCTGCGTAGGCTTGACCATCCTAATGTGATAAAGCTAGAAGGATTAGTTACATCAAGGATGTCTTGT AGCTTGTACCTTGTTTTTGAATACATGGAACATGATTTGGCTGGCCTTGCATCACATCCTGGTTTTAAATTCACAGAAGCACAGGTCAAATGTTACATGC AACAACTCCTACTAGGACTTGATCATTGTCACAGTCGTGGTGTCTTACACAGGGATATTAAGGGTTCCAATCTTCTAATTGGTAATAATGGTATCCTTAA AATTGCAGACTTTGGTCTAGCAAGCATTTATGATCCCAGTCATATTCAGCCTTTGACAAGCCGGGTTGTGACTCTCTGGTATCGTCCTCCGGAGCTTCTA CTTGGAGCAACTTACTATGGAACTGCTGTTGATTTGTGGAGTACTGGTTGTATACTTGCCGAATTATATGCTGGAAAGCCTATTATGCCTGGTAGAACCG AGGTGGAGCAGTTACATAAGATTTTCAAACTTTGTGGTTCTCCTTCTGAGGAATATTGGAAAAAGTCAAAGCTGCCTCATGCAACTATATTTAAGCCTCA GCAACCATACAGACGGTGTGTAGCTGACACATTTAAGGAGTTTCCTGCACCAGCTTTAGCACTCATGGAGGTCTTGCTTTCTGTTGATCCTGTCGACAGG GGAACTGCCGCTTCTGCTTTGAGAAGTGATTTCTTTACAACAAAGCCACTTCCGTGTGATCCTTCAAGCTTGCCAAAATATCCGCCAAGCAAGGAGTTTG ATGCAAAAATGCGAGATGAAGAAGCTAGAAGACAAGGCGCGGTAGGAAGCAAGGGCCACAGACATGATACTGAAAGAAGAGGAATGAGAGAATCTCGAGC AGTACCAGCACCTGATGCTAATGCTGAGCTGGCCGTATCTATGCAGCAGAAGAGGCAAGGTCAGTCGAATACTAAAAGCCGGAGTGAGATGTTTAATCCT CATCCAGAAGAAGTTGCATCTGGGTTTCCGATCGACCCTCCTAGACCTTCACAGGTTGTTGAAACAAGTGAACCCCGGGGTCATCATCAGCATAAGAGAG GCTCTCATTCAGGCCCCCTTACTCAACGTGCTGCTTGGGCAAAAAATAATGGTAGGAATCCTGAGGAAGCTCCCAAGATTTGTAACGGAGGTGACGTGTC AACTATTCCCGGGCTAGTGGGTGCAAGGAGGAGCTTGTTGTCCGAGGACCACAGGGAAAGATCAGTTTCATCCCAAACCGAAGTTCCGAAACTAATAGCA CGGTTTCCAGGATCCTTCAAGGAAACCTCCGAGTCTTTGAGTCAACTGAATCAGAGGCAGCAGTTGCAGAGTTCTCATGAAAAGGAGGATGACAGGAGGG GCTGCAAAGTTCCAGTCCTTGTGGGGCATGGATCAAAGGGTCACAAAATCCACTACTCTGGTCCCTTGACAGGGAACATGGATCAAGTAATGAAAGACCA CGACCGCCAAATCCAAGAGGCGGCTCGACGAGCTCGGCTGGACAAGGCAAAGCTGAGGAAAATACAGGTTGAAGGTAGTCAATTATCAAACGGTTTATTT ACCGGTAGTTAA
AA sequence Show only first row Show all	>Lus10025773 pacid=23177533 polypeptide=Lus10025773 locus=Lus10025773.g ID=Lus10025773.BGIv1.0 annot-version=v1.0 MGCLCCKPFAIDDAKERLSSKASSEVRVSRAASSRREEVYRPKEKYDSNDGREMLIGKQIIGSSRLHVSENVDKRRPKMEYAVVRHPSMGSMPKATEGEQ VAAGWPSWLAAVAGEAIKGWVPRKADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPDSVRFMAREINILRRLDHPNVIKLEGLVTSRMSC SLYLVFEYMEHDLAGLASHPGFKFTEAQVKCYMQQLLLGLDHCHSRGVLHRDIKGSNLLIGNNGILKIADFGLASIYDPSHIQPLTSRVVTLWYRPPELL LGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYRRCVADTFKEFPAPALALMEVLLSVDPVDR GTAASALRSDFFTTKPLPCDPSSLPKYPPSKEFDAKMRDEEARRQGAVGSKGHRHDTERRGMRESRAVPAPDANAELAVSMQQKRQGQSNTKSRSEMFNP HPEEVASGFPIDPPRPSQVVETSEPRGHHQHKRGSHSGPLTQRAAWAKNNGRNPEEAPKICNGGDVSTIPGLVGARRSLLSEDHRERSVSSQTEVPKLIA RFPGSFKETSESLSQLNQRQQLQSSHEKEDDRRGCKVPVLVGHGSKGHKIHYSGPLTGNMDQVMKDHDRQIQEAARRARLDKAKLRKIQVEGSQLSNGLF TGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	1.4	0.9217
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	5.7	0.9094
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	5.7	0.9148
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	8.5	0.9205
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	11.2	0.9003
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	12.2	0.8582
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	13.4	0.8941
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	14.1	0.8897
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	15.1	0.8895
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	15.8	0.8732

Compare expression of checked genes

Lus10025773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.