Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67520 374 / 5e-120 lectin protein kinase family protein (.1) AT3G16030 377 / 1e-118 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G61610 350 / 3e-108 S-locus lectin protein kinase family protein (.1) AT4G23200 341 / 7e-107 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT1G11330 339 / 5e-104 S-locus lectin protein kinase family protein (.1.2) AT1G65800 338 / 6e-104 ARK2 receptor kinase 2 (.1) AT4G11530 332 / 3e-103 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23180 332 / 3e-103 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G11340 337 / 9e-103 S-locus lectin protein kinase family protein (.1) AT4G21390 335 / 1e-102 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025784 [exp] 638 / 0 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10003156 [exp] 367 / 2e-114 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10033741 [exp] 359 / 5e-112 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 360 / 6e-112 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 357 / 3e-111 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 351 / 9e-109 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 349 / 6e-108 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 360 / 1e-107 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10023391 [exp] 356 / 2e-107 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035850 [exp] 364 / 4e-119 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G036466 [exp] 361 / 3e-118 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.001G437950 [exp] 345 / 4e-112 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 357 / 2e-111 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 356 / 7e-111 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 356 / 9e-111 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 356 / 1e-110 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 344 / 5e-110 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 353 / 1e-109 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G027501 [exp] 347 / 1e-109 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10025774 pacid=23177440 polypeptide=Lus10025774 locus=Lus10025774.g ID=Lus10025774.BGIv1.0 annot-version=v1.0 ATGGCGATTACCAAAGTAGGAGATCCATTTAACTTGTCTATCAGCTTCATCTTCTTCTTCTCTTTTGTGGCACTGGAACTATGTCCTCTGTTGTCAAACT GTGAAAGAGATAAACTCTTACACGGGCAAGAGTTGAGAGATGGGCACCACTTGGTTTCAGCCTCTGGAGTTTTTGTTTTGGGATTCTTCACCCTTCCACA TTCGCACCACCGCTACCTTGGAATCTGGTACAGAAGTCCATTCGATAACGCACTCATCAACCGTAGTCCCAATCAATCTCCCCGAACTTACTACTCCATC CCGCCGCCCCCAATACGGCCGGTCTGGGTGGGTAACAGAGACGCACCACTGGAGGACAAAACAGGGTCTATGGTGATTGGAAGTGACGGGAATCCGAAGG TCGTAAATGGGGGAGGCGATCGAATTGCTGAAGTGAGTGCAACGGTGGTTTCTGGCCGAACGACTGCCGTTTTGATGGATTCTGGAGATTTGGTGTTGAA GGAACTGGATCCCAACGGGACAGTGATGCAGGAGGTGTGGCAGAGCTTCGATTATCCAACAGATACCTTACTCCCAGGTATGCGATTAGGTGCAAATCTA CCCGGGCATGTTTGGTCTCTGAAACCATGGCCCAGTTCGAGTAGCAAATTCAGTTTCGGGTTAGACGTCAACCGGACGAGTGAAATGGTGATTTGGTGGG AAGGACGGGTGTATTGGAGAAGTGGTGCGTGGTTGAATCAGACTTTAGGGGGTTTTAATTTTAGCTTTAAATCGAGTAATAATGGGGAAGAGATGTATAT GTTTTACAGTGCCAAAAGGGGAGATCAAGACGATGTTAGTTTTACAAGGATAACTATTACTAGCCGTGGTGCTTTTATTGGTGAAGATCTTCTTAATTAT CAATATCTATATGACTACCTAACGTACGTAGACTGCAGTGACGGTGAACAGAGCGTAGCGTTGATCCCGAACTACCTTCCAGGAAATTTTGGTTCTAGGT TGATGAAATGTAATCCATCCCCCCCAACTTTAAATTATTTCCTCAGGGACTCTAGTGGAGAGGATGTTGGATGTTTTGCGAATGATGATATTGATACCCC TAATTGCTTTGGGGACTACATCAATTATGCAAGAAAAGATGAAGAACAAGTGTATGAGGAAATGAGGAGCAGAAATGTGAGATTTCAGACCACAGCGATG ACCACTGCCGATACAGAGCAAGATATATTGTTACATGAGCTTCGCATGGGCAGTACTGATCAGGCAAACGCCAATGATTTCCAGTTCTTCAGTTTTGAGC ACATAGCATCTGCTACCAGAAATTTTGACCCTTCTAATAAGCTTGGACAGGGTGGTTTTGGACCCGTTTATAAGGGGAAGCTGGCAAGCGGGTTAGAAGT AGCAATCAAAAGACTAGCAGCAAGTTCAAAGCAGGGGATAGTTGAGTTCAAAAATGAAGCAAGACTTATAACCAAACTGCAGCATGACAATTTGGTCAGG CTAGTTGGTTGTTGCATTGACAAGGGAGAGAAAATTCTGGTCTACGAGTATTTGCCCAACAAAAGCCTTGATTTCTCTCTTTTTTCTTTTTGGTTGGACT TGCTTGCAGCTCCCACAAACGAGAACAAGCTAGATTGGAAGCAAAGGTTGGACATCATTCAAGGGATAGCTCAAGGACTTGTATATTTGCACAAATATTC AAGGCTGAAGATCATCCACAGAGACCTCAAGGCTAGCAACGTCTTACTCGACCATGAGATGAAGGCCAAGATTTCGGATTTTGGGTTGGCCAAAATATTT CATGCCAATGAATCTAGGGCTATCACCTCAAGGGTTGCTGGAACTTTCGGCTACATGCCTCCTGAGTATGTCATTGAGGGGATTTTCTCAACCAGATCTG ATGTGTTCAGCTTCGGAGTTCTGTTGCTGGAAATCGTTAGTGGCAAGAGGAACAATCACTTCAGCCACGATGAAAGCGGCCCAAGCAGTCTCGTTACATG GGCTTGGGAGCTATGGAGGCAAGGAAGGGGACACGAAGTGGTTGATGTTGGAATAAATGATAGAAGCAATGAGTGTGAGAATGAAGCATTGAAGTGCATC CACATAGGTCTGTTATGTGTGCAGGAGAATCCAAGGGACAGGCCATCTATGTTAGAAATCACCTCCATGTTGTATAATAACAATGAAACAGCACAATTGC CTTCCCCAAATCAGCCTGCATTTTACTACAGGGTGAACTTGCATGATGAAGCTCAGGTTATTGAAGAGGCAGAGGCTGAGGAGAATCATCATACACTGAA CCAGGTAACCATCACTTCAGTTGGTGGTAGGTAG
AA sequence Show only first row Show all	>Lus10025774 pacid=23177440 polypeptide=Lus10025774 locus=Lus10025774.g ID=Lus10025774.BGIv1.0 annot-version=v1.0 MAITKVGDPFNLSISFIFFFSFVALELCPLLSNCERDKLLHGQELRDGHHLVSASGVFVLGFFTLPHSHHRYLGIWYRSPFDNALINRSPNQSPRTYYSI PPPPIRPVWVGNRDAPLEDKTGSMVIGSDGNPKVVNGGGDRIAEVSATVVSGRTTAVLMDSGDLVLKELDPNGTVMQEVWQSFDYPTDTLLPGMRLGANL PGHVWSLKPWPSSSSKFSFGLDVNRTSEMVIWWEGRVYWRSGAWLNQTLGGFNFSFKSSNNGEEMYMFYSAKRGDQDDVSFTRITITSRGAFIGEDLLNY QYLYDYLTYVDCSDGEQSVALIPNYLPGNFGSRLMKCNPSPPTLNYFLRDSSGEDVGCFANDDIDTPNCFGDYINYARKDEEQVYEEMRSRNVRFQTTAM TTADTEQDILLHELRMGSTDQANANDFQFFSFEHIASATRNFDPSNKLGQGGFGPVYKGKLASGLEVAIKRLAASSKQGIVEFKNEARLITKLQHDNLVR LVGCCIDKGEKILVYEYLPNKSLDFSLFSFWLDLLAAPTNENKLDWKQRLDIIQGIAQGLVYLHKYSRLKIIHRDLKASNVLLDHEMKAKISDFGLAKIF HANESRAITSRVAGTFGYMPPEYVIEGIFSTRSDVFSFGVLLLEIVSGKRNNHFSHDESGPSSLVTWAWELWRQGRGHEVVDVGINDRSNECENEALKCI HIGLLCVQENPRDRPSMLEITSMLYNNNETAQLPSPNQPAFYYRVNLHDEAQVIEEAEAEENHHTLNQVTITSVGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	0	1
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	4.5	0.8671
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	5.3	0.8611
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	7.9	0.8206
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	10.0	0.8790
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	10.4	0.8639
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	13.0	0.7961
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	14.3	0.7902
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	17.3	0.8271
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	22.6	0.8566
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	25.4	0.8405

Compare expression of checked genes

Lus10025774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.