Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14920 531 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT5G05480 323 / 1e-102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017926 [exp] 599 / 0 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 425 / 3e-144 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025771 [exp] 399 / 6e-132 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017437 [exp] 327 / 7e-104 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007518 [exp] 185 / 1e-54 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G109700 [exp] 614 / 0 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.010G185100 [exp] 346 / 7e-112 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.008G072400 [exp] 339 / 5e-109 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [flax] [poplar] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Lus10025775 pacid=23177551 polypeptide=Lus10025775 locus=Lus10025775.g ID=Lus10025775.BGIv1.0 annot-version=v1.0 ATGGCTCCTCATTTCTCTACGTTCCCTCTACTTGTTCTCATCTTCCTCAATTCCCTCCTCTCCGCCTCTGCAAACCTCCACAGATTCAAACCCGATTCCC TCACAATCCCGACGACAACCCACTCCGACACCGTGTTCTTCGAAGTCACGAAACCCATCTCAGTCCCCAACACAAAACCTTGCGTACACCATCTCCTCAC CCATGATTTCGGATACACTCTCAACAAGCCCCCTGTTGTTACAAACTACACTCCTCCTTCCCACTGCCCTTCTTCTTCTTCTTTCTCGAAAATCGTCCTC GAATGGAACGCCACTTGCAAAGGCAGGCAATTCGACCGCATCTTCGGTATCTGGCTCGGCGGTGTCGAGCTTCTCCGTAGCTGTACCGCCGAGCCCACAC GAACCGGGATCTTCTGGAGCGTCCGAAAGGATATCACCAAGTATTCTTCGTTGCTCCTTGGGAATCGAACTCAGGACCTCTCTATCTTTCTTGGGAACAT CGTTGATGGTACATACACGGGGATCTATCATGTCAATGTGAGTATGTATTTTTACCCTTCTGCCTCCGAGGTTGAACATAAATTTCAGAAGAAGAAGACC AATAATTATGCGCCGGCTGATTTGGTACTGCCGATTTCGAGGAACAACGTTCAGTCGTTGAACGATGGATTGTGGTTCGAGATCGAAAACTCGACCCAAT TCGTGTCAAAAGAGTTGGTCGGCAATATTCCACCTAATGTGTATAGAGCAGTGTTGGAGGTTTACGTTTCGCCCCATGGGGATGATGAATTTTGGTACAC CAACTATCCCAACGACTATATTATAAGCAACAACATTACTGGATCGCCTGGTAACGGACCGTTTCGCGAGGTTGTGGTGAGTCTCGACGGAAATACGGTA ATAGGTGCAATCTGGCCTTTTACCGTGATTTACACCGGAGGAATTATCAATTTGTTTTGGAGGCCAATTTCGGGCATCGGATCGTTTGATCTCCCTAGTT ACAATATTGAAGTGACACCCTTTTTAGGGACACTGCTCGACGACTCTAAGAAGCATAGTTTTGGATTCAGAGTGACCAACGCGTTGGATGTGTGGTTCGT CGATGCCAATTTGCATCTTTGGTTGGACAGCGAGAGCGAGAAAACAGAGGCGAAGCTTGTTAAGCATGATAGCGATCTTCGTCTCGACGTACATTCGAAC TTCGAAGGGTTGGATGGTGAATTTACTACGCATGCTAGCAGGTCGGTCTACTCGCACGGGTGGGTGAAATCGTCGCACGGTAACATCACAACTCGGTTCG AGCAACGATTACGGTACAACAATTCGATGGAGCTACGGAAAGACGGACATGTACAGATTGTGAATCAGACGATCTCGACAAACGACGTCGCGTCATTCAA GCCCAAGTCTCTCTTGTTGAAATCGAAGAAAAAATTCAGTATAAAATTGTACACCGACACCGAGGAAAAAGAGAACAACACGGTTTCCTATGCGACGGAT CTGACATTGGGGTTTGGTTCGAGGGAATACGGCGGCGGCCGAAGGAAGGGGATTAATAGATCGGCGGTGGAAAATGTGCAGAAGGCTAAAGGAGAAATTG TGGTGAAGGGGAACTTGGTGACGAGTGGAGTTGGTGCGACGAAGCAGAGGTATCGGTATCGAGGAGGGGATGGATTGTGCTATTTCAGGGACGTCAAAAG CAACAACTACACCATACTTGCTGATAAACAAGGAACCAACTGCAACCATAGTTGA
AA sequence Show only first row Show all	>Lus10025775 pacid=23177551 polypeptide=Lus10025775 locus=Lus10025775.g ID=Lus10025775.BGIv1.0 annot-version=v1.0 MAPHFSTFPLLVLIFLNSLLSASANLHRFKPDSLTIPTTTHSDTVFFEVTKPISVPNTKPCVHHLLTHDFGYTLNKPPVVTNYTPPSHCPSSSSFSKIVL EWNATCKGRQFDRIFGIWLGGVELLRSCTAEPTRTGIFWSVRKDITKYSSLLLGNRTQDLSIFLGNIVDGTYTGIYHVNVSMYFYPSASEVEHKFQKKKT NNYAPADLVLPISRNNVQSLNDGLWFEIENSTQFVSKELVGNIPPNVYRAVLEVYVSPHGDDEFWYTNYPNDYIISNNITGSPGNGPFREVVVSLDGNTV IGAIWPFTVIYTGGIINLFWRPISGIGSFDLPSYNIEVTPFLGTLLDDSKKHSFGFRVTNALDVWFVDANLHLWLDSESEKTEAKLVKHDSDLRLDVHSN FEGLDGEFTTHASRSVYSHGWVKSSHGNITTRFEQRLRYNNSMELRKDGHVQIVNQTISTNDVASFKPKSLLLKSKKKFSIKLYTDTEEKENNTVSYATD LTLGFGSREYGGGRRKGINRSAVENVQKAKGEIVVKGNLVTSGVGATKQRYRYRGGDGLCYFRDVKSNNYTILADKQGTNCNHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031208 [exp]	1.4	0.9784
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	2.2	0.9671
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	3.5	0.9630
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	4.0	0.9675
AT1G58070			unknown protein		Lus10019953 [exp]	4.7	0.9720
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	7.3	0.9679
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	8.6	0.9422
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	11.5	0.9594
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	11.5	0.9447
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	14.7	0.9629

Compare expression of checked genes

Lus10025775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.