Plant FIBer expression Database

Lus10025776 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G52343 80 / 1e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035889
[exp]
163 / 2e-50 AT4G32680 40 / 3e-04 unknown protein
Lus10035888
[exp]
127 / 9e-38 AT1G52343 57 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G055200
[exp]
85 / 2e-19 AT1G52343 96 / 2e-23 unknown protein
Potri.018G035800
[exp]
43 / 0.0001 AT4G32680 76 / 1e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10025776 pacid=23177620 polypeptide=Lus10025776 locus=Lus10025776.g ID=Lus10025776.BGIv1.0 annot-version=v1.0
ATGGCGAGTGCTGAAAAATCAAATGAGAGGAGAAGGCGTATCATGGAAAGAGGATCCGATCGGTTGGCTCTCATCACCGGCCAACTCAAGAATCTCGAAC
GCACTTCCTCCCTCCCCTCCGCCGCTCCCCCTTCCCTTTCCTTTACCGATCGATCAGAGATCCATTTCGATACCCCGCAGGCCACAGAAGTAACATCTAG
AAAGGAATATACAGTCCCGAAACAAGTTCCAAAGGCCGAAAAATTCGATTCATCAAACCACACTAGATTGGCAACAACATCAGATATAAAAAAGCCTCAA
GCTCCACCGAAAATCGGCCAACCACCACCACCACCATCATCATCATCGTCGTCGTCGTCAAAGGCGAAACAGCAGACAACAACATTCTTCTCATCGAGGC
GGCTGAATGCTTGCATCATAGCTTCAGAGATGCCACGAGCCAAATGCTCCACCGCTATAGCCGTGCTAGTGTTGCTGTTCCACTTGATTGGAATCAACGG
CGGGGGGTGCTGCGAAAAGTATAAGCCGGTGTACTTGATCGTGGTGACGAGTGTGACGGTTGTGTTGGTTAGGATGGTTCAGGGGAAGGGGACGGTTGTG
GAAGATGCTGGGAAAGAAGATAAAGCAGCGGAGGATAAGAACTGGAGAGATGCGTTTATGGTGTTGGAGAGAGGTCTTACTGCTTACCAAGCTATCAGGG
CCATGTTTATCGACTGCAGCATTTACTTTGTTATTGTCATTTCTGGCCTCTCTATGGCATCATCCAATTCATGA
AA sequence
>Lus10025776 pacid=23177620 polypeptide=Lus10025776 locus=Lus10025776.g ID=Lus10025776.BGIv1.0 annot-version=v1.0
MASAEKSNERRRRIMERGSDRLALITGQLKNLERTSSLPSAAPPSLSFTDRSEIHFDTPQATEVTSRKEYTVPKQVPKAEKFDSSNHTRLATTSDIKKPQ
APPKIGQPPPPPSSSSSSSSKAKQQTTTFFSSRRLNACIIASEMPRAKCSTAIAVLVLLFHLIGINGGGCCEKYKPVYLIVVTSVTVVLVRMVQGKGTVV
EDAGKEDKAAEDKNWRDAFMVLERGLTAYQAIRAMFIDCSIYFVIVISGLSMASSNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G52343 unknown protein Lus10025776
[exp]
0 1
AT3G45790 Protein kinase superfamily pro... Lus10013791
[exp]
21.8 0.7322
AT5G48670 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) Lus10022316
[exp]
36.7 0.7099
AT5G20080 FAD/NAD(P)-binding oxidoreduct... Lus10014491
[exp]
63.0 0.5948
AT1G07710 Ankyrin repeat family protein ... Lus10005432
[exp]
106.2 0.6488
Lus10042412
[exp]
228.9 0.5923
AT1G07850 Protein of unknown function (D... Lus10036142
[exp]
233.8 0.5833
AT1G23200 Plant invertase/pectin methyle... Lus10009110
[exp]
241.0 0.5953
AT1G07710 Ankyrin repeat family protein ... Lus10015224
[exp]
250.9 0.5908

Lus10025776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.