Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52320 613 / 0 unknown protein AT5G25590 545 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 179 / 3e-47 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 175 / 8e-46 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 152 / 4e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 129 / 8e-31 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G27090 119 / 1e-27 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 112 / 2e-25 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G77500 111 / 4e-25 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 109 / 2e-24 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035887 [exp] 1059 / 0 AT1G52320 747 / 0.0 unknown protein Lus10022116 [exp] 562 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 541 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 450 / 2e-152 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10002864 [exp] 298 / 9e-96 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 177 / 6e-52 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 174 / 4e-46 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 169 / 1e-45 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 159 / 2e-40 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054800 [exp] 717 / 0 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 697 / 0 AT1G52320 615 / 0.0 unknown protein Potri.018G036400 [exp] 610 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 593 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 190 / 8e-52 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 190 / 4e-51 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 187 / 5e-50 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 185 / 9e-50 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 160 / 6e-41 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 159 / 1e-40 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10025777 pacid=23177604 polypeptide=Lus10025777 locus=Lus10025777.g ID=Lus10025777.BGIv1.0 annot-version=v1.0 ATGGGGTGCTCACAGTCCAAAATCGAGAACGAAGAAGCCGTCAACCGCTGCAAGGAACGCAAGCAGTTCATGAAAGATGCCGTCTCCGCACGCAACGCCT TCGCCGCCGCTCACTCCGCCTACGCCATGTCCCTTAAGAACACCGGCGCCGCTCTCAGCGATTACGCCCACGGCGAAGTCCCTACTTCCTCAACCTCCGC CGCCACCCTCCCTACCTCCTCCTCCGCTCCTTTCACTGTGCCAGCGCCGGTGCCTCCCCAGGCTCCGTTCGATACGCTTCTCCCCCCTCCCCCTCTGCCT ACGGAGTATCAAGGAGCTACTCTCGATTTTCAAGGAGCTCCCTTGCAGAGGGCCACTAGTATGCCCGAGATGAAGATCCATAAACCGGATTTGAAGCCGG CGGGTCCGACTATTAATGAAGACGAGGAGATGGAATTCGAACCCCCCGAGGACGAGAAATTGGTCAGGAAGCGGGGTGGAAGCAGTAGGGGAAGTAGTAG TAACAGAGAGAATCATTACATGGAGAAGGAGCCACCGCCGCTCCCACCGCAGCCACAGATGAAGAGGCAAGAAGAGCCGGTGTTGGAGGAGGATGATGAT GAGGACGACGACGATGATGAGGTTGAGATGCGGATGAAGCAAGAGGAGGCTGAGCGAAAGGCTTACGAAGCAAAGGCGGCCAAGAGATTGGCGGAAGAGG AACGGATGGTAATGCAGGAGCAACATAAGGTAGAGAAGGCAGTGGAGGTGCCTGAACCTGTACCCGTTCCTATTGTTGAGAAGAAGCAAGCTAAGAAAGT CGGGGGAGACGACGTGGGAAGGAGGATGATGAAAGGATTGAGTTTGATGCAGATATTTACGGAGCTTGACAATCACTTCTTGGCTGCATCTGAGAGTGCT CATGAGGTTTCCAAGATGCTGGAGGCCACTAAATTGCATTATCATTCTAATTTTGCTGATAATCGTGGACATATTGATCACTCTGCAAGAGTGATGCGAG TCATTACATGGAATCGGTCCTTTAAAGGGGTCCCTAATGCATACGATGGGATCGATGAATTTGATTCCGAGGAGCATGAAACTCACGCCACTGTACTGGA CAAGATGCTAGCTTGGGAAAAGAAGCTCTATGATGAAGTGAAGGCAGGTGAAGTTATGAAGTTTGAGTATCAAAGGAAGGTTGCTTTGCTTAATAAGCAG AAGAAACGTGGTTCGAATCCGGAGTCCCTGGAGAAATTGAAAGCTGCAGTAAGTCATCTGCATACGAGATACATTGTAGATATGCAATCAATGGATTCCA CTGTTTCGGAGATAAATCGCTTACGTGATGAGCAGTTATATCCAAAACTCGTCCACCTAGTTGATGGGATGGCGATAATGTGGGATACAATGCGAGTTCA TCATGAGGCACAATCGAAGATCGTTTATGCATTGAGATCTTTAGACATCTCTCAGTCCCCCAAGGAAACTAGCGAGCACCACCATGACCGTACCTATCAA TTATGGGCAGTTGTTCGGGAGTGGCATGCACAGTTCTGTGGTCTAATAGACAACCAGAAAGCATACCTAAAGTCCCTCAACAATTGGTTGAAACTAAACC TTATCCCGATCGAGAGCAGTTTGAAAGAAAAGGTGTCTTCTCCACCCAGAGTTCAGACTTCTCCTATTCAGCCGCTTCTAATGGCCTGGCATGACTTCAT GGACAAGCTACCGGACGAGGTTGCAAGAACAGCAATAAGCAACTTTGCAGCCGTGATAGAGACAATCATGCATCATCAAGACGAAGAGATGAAGCTGAAA GAAAAGTGCGAAGAAACCCGTAAAGATCTTGCACGTAAGACAAGGCAGTTTGAGGACTGGTATAACAAGTATATGCAGCGAAGAACTCCAGAAGAGCTGG ATCCAGAGAGGCCAGACAGCAGCATCAAGGATGCTGTCGCGGAGAGACAGTTTGCAGTGGAGGCTGTGAAGAAGCAACTCGAAGAAGAGGAAGAAGCGTA CCAGAGGATTTGCGTTCAAGTGAGGGAGAAGTCTTTAGCGAGTCTCAAGACTCGTCTGCCGGAGCTGTTCAGGGCGATGTGCGATGTTGCTTTGGCTTGT TCAGAGATGTACAGGACCCTCAGGGCTATATCACAACGCCAAAGAAAACCAAGCCAAACCTCCTGA
AA sequence Show only first row Show all	>Lus10025777 pacid=23177604 polypeptide=Lus10025777 locus=Lus10025777.g ID=Lus10025777.BGIv1.0 annot-version=v1.0 MGCSQSKIENEEAVNRCKERKQFMKDAVSARNAFAAAHSAYAMSLKNTGAALSDYAHGEVPTSSTSAATLPTSSSAPFTVPAPVPPQAPFDTLLPPPPLP TEYQGATLDFQGAPLQRATSMPEMKIHKPDLKPAGPTINEDEEMEFEPPEDEKLVRKRGGSSRGSSSNRENHYMEKEPPPLPPQPQMKRQEEPVLEEDDD EDDDDDEVEMRMKQEEAERKAYEAKAAKRLAEEERMVMQEQHKVEKAVEVPEPVPVPIVEKKQAKKVGGDDVGRRMMKGLSLMQIFTELDNHFLAASESA HEVSKMLEATKLHYHSNFADNRGHIDHSARVMRVITWNRSFKGVPNAYDGIDEFDSEEHETHATVLDKMLAWEKKLYDEVKAGEVMKFEYQRKVALLNKQ KKRGSNPESLEKLKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQLYPKLVHLVDGMAIMWDTMRVHHEAQSKIVYALRSLDISQSPKETSEHHHDRTYQ LWAVVREWHAQFCGLIDNQKAYLKSLNNWLKLNLIPIESSLKEKVSSPPRVQTSPIQPLLMAWHDFMDKLPDEVARTAISNFAAVIETIMHHQDEEMKLK EKCEETRKDLARKTRQFEDWYNKYMQRRTPEELDPERPDSSIKDAVAERQFAVEAVKKQLEEEEEAYQRICVQVREKSLASLKTRLPELFRAMCDVALAC SEMYRTLRAISQRQRKPSQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52320			unknown protein		Lus10025777 [exp]	0	1
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	1.7	0.8817
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	2.0	0.9019
AT5G61530			small G protein family protein...		Lus10032491 [exp]	2.8	0.8768
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	4.5	0.8611
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	6.3	0.8981
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	9.2	0.8762
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	14.5	0.8548
AT4G10930			unknown protein		Lus10023068 [exp]	15.9	0.8621
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	19.5	0.8477
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	23.9	0.8229

Compare expression of checked genes

Lus10025777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.