Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79915 236 / 2e-75 Putative methyltransferase family protein (.1) AT5G27400 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 47 / 2e-05 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035886 [exp] 588 / 0 AT1G79915 291 / 1e-97 Putative methyltransferase family protein (.1) Lus10043153 [exp] 254 / 3e-75 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10015166 [exp] 42 / 0.0006 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181200 [exp] 367 / 3e-126 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.005G039000 [exp] 42 / 0.0008 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025778 pacid=23177479 polypeptide=Lus10025778 locus=Lus10025778.g ID=Lus10025778.BGIv1.0 annot-version=v1.0 ATGACATCCGATGCTATTTACTCGACATTCATGCGCCGGAGAATGTTTGACGAGCGGATGGATGATGACGGCGGCTGTCAGGAGTTTGGGGAGGAGGTGG AGGAGCAGGTGACAAGCGAGCTACATCGTGGGTGTTTATCTGATTCGTCAGGGCCACACATTATGCATTTCACAATTTCCATCCCTCCCGGTGCGAACAG CAGCAGATTTAGTGGAATGTTAAAGGAAAATCAGCAAGCTCACATGGAGAAAGTGATTGGCGTGGATGATGATGGTGACCTTGTTCTAACTAGACGTAGC CACTGCCAGGATTGTTCTGGTCAGATTATTAAACTCTCTATCCAGCATTATATCACATCATCAATACAGGGCGTTGGTTTACAGGTTTGGAAGGCTGAGC TATTGTTGTCCGACTTTGTGCTGCATAAAATGCTTACTTCGTCAGAATTCAACGACATCAGTTCATTAGTACTTGGAGCTGGAACAGGATTAGTTGGTAT GTTGGTTGGACATGTGGCTAAATCAGTGTTCCTGACAGGTGAGGTTCATGGTCTTCCAGCAGTTGAACCCGCTCTTTTCAATCTGCAACTACCCACAGAT CGTGGTGAGAAAATCCTAGCTAATTGTGGAAGCAATGTTCATCTTAATTATGAAGCCCTGCAGTATAACGGGTCAATTTATGTACGTGAACTCGATTGGG AAAATTCCTGGCCCCCAAATGTGAAACGACGGAATGATTCTTGTCTTGAAAGCTTTTGGTGGAGTCTTTCCGACGTTGAAGAAGCTGAGAGAGCTTCTGT TCTCCTAGCTGCGGATGTAATATACAGTGATGACCTGACTGATGCTCTATTCAGTTTGCTCGATACACTAATGCAATTGGGTCCGGAGAAGGTTTTATAC TTGGCCCTGGAGAAACGGTACAATTTCAGCCTTGCTGATTTTGATGTGGTGGCGAATGGTTATGCTCATTTTCGAAGTTTTATCAGGGGAGAAGAAGAAT TTGGGGAACGTGAGTCCCGTACTCCATTTGTGGGGAGATGCATCGACCTTTGGCAGATTCCACAGTTGGTAAGGGAGTATGATAGGGGAGAGGACTTAGA GCTTTGGAAGATCAAGTATGATAGGAGGAAAGCCCGCTCATAG
AA sequence Show only first row Show all	>Lus10025778 pacid=23177479 polypeptide=Lus10025778 locus=Lus10025778.g ID=Lus10025778.BGIv1.0 annot-version=v1.0 MTSDAIYSTFMRRRMFDERMDDDGGCQEFGEEVEEQVTSELHRGCLSDSSGPHIMHFTISIPPGANSSRFSGMLKENQQAHMEKVIGVDDDGDLVLTRRS HCQDCSGQIIKLSIQHYITSSIQGVGLQVWKAELLLSDFVLHKMLTSSEFNDISSLVLGAGTGLVGMLVGHVAKSVFLTGEVHGLPAVEPALFNLQLPTD RGEKILANCGSNVHLNYEALQYNGSIYVRELDWENSWPPNVKRRNDSCLESFWWSLSDVEEAERASVLLAADVIYSDDLTDALFSLLDTLMQLGPEKVLY LALEKRYNFSLADFDVVANGYAHFRSFIRGEEEFGERESRTPFVGRCIDLWQIPQLVREYDRGEDLELWKIKYDRRKARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79915			Putative methyltransferase fam...		Lus10025778 [exp]	0	1
AT5G53500			Transducin/WD40 repeat-like su...		Lus10012846 [exp]	3.2	0.8252
AT2G40435			unknown protein		Lus10017415 [exp]	8.2	0.8422
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	8.3	0.8482
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	9.9	0.8664
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	10.4	0.8486
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10002145 [exp]	11.0	0.8106
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	14.7	0.7842
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	14.9	0.7958
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	16.1	0.8213
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	18.5	0.8211

Compare expression of checked genes

Lus10025778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.