Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 175 / 9e-50 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 137 / 7e-36 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 134 / 4e-33 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 103 / 1e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 100 / 5e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 96 / 1e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G14830 85 / 2e-17 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 84 / 8e-17 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 83 / 2e-16 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G13340 74 / 4e-14 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035885 [exp] 709 / 0 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 384 / 7e-125 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10011455 [exp] 239 / 3e-74 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 224 / 2e-68 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10038167 [exp] 226 / 1e-66 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10023635 [exp] 157 / 5e-41 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034905 [exp] 155 / 1e-40 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 103 / 3e-23 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 102 / 6e-23 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054500 [exp] 228 / 4e-68 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 227 / 2e-67 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 206 / 3e-60 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 204 / 2e-59 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 152 / 1e-39 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 105 / 8e-24 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 101 / 2e-23 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 102 / 4e-23 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 102 / 9e-23 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 92 / 2e-19 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10025779 pacid=23177651 polypeptide=Lus10025779 locus=Lus10025779.g ID=Lus10025779.BGIv1.0 annot-version=v1.0 ATGTTGTCTGCTGAGCTTCCGCCCGACGAGCTGGCATTTCTGCTTCTTGATCCTTTTTCCAACCTTGTGGTTGTATTTATGGAATCAGAATCGTTGTTTC TCCCTTCCGTTGGCAAGTCACTGATAAAGATGACCAAGGCAAGGCTGGATGCGTCGAAGAAGAAGAAGAAGAACGTTGTGGCCAAATACCTTAAGAATGA TATCGCTGACCTTCTCAGGACTGGCTTTGATTCCAATGCTTATAGCAGGACTCAAGAGCTCATATTCGAGCATAACTCGATTGCTGCTTACAAGTTTCTG GAAGATTTTTGTGACTGCATTTCCACCAATCTTGCTCTCTTGGACAAACGAAAGGAATGCCCCAAGGAATGCAGAGAAGCCATACATTCTCTGATGTATG CTGCAGCAAGATTGGCTGCGTTCCCAGAACTTCGCGACCTTCGATCCCTTTTCGCTCATAGATATGGTGATTGCCTTGAATTGTATATTAACAAGGAGTT TGGTGAGTTGCTGAATCAAAGGCTTGCAACAAAGGAGATGAAGCTTCAGCTACTTGGTGATGTGGCTCAAGAATTCTCCATCAACTGGGATCCCAAATCC TTGGAGCAACCTCCCCATTCCATCCAGCAGCAGGTCAGCAGCCCCCGAGACTTACCTGATTGCAACGTCACAAAGGATTATCTGTTTCTTTTGCAGAACC AGAACAGAAAAGAGGGATCTAACCATCCTGAAGACGGTGATGATAAAAGAATGAAGAGCAAAGATGATGTTGTTGCTCTAAGTAGTAAACACAACAGATT CAATAAGTATGGTAAAAGGGAAAGCCACAGTACATCATCAGCTGAGAACTTGTTGGGCAGAAGTACTGAAACAGAAGTTGCTTCATCACCAAGAAGGAAG AATAATGTAAGTGATGAAAAGCACAGGCTTCAAAATAGCAGCGGGGGTACTGAGAGCGCAGATCGAGATAGTTCACAACCTAGTCCAAGCTCAATGGGAA CTACTAGTACTAGTAGTGCTTCAAAGGATGAAGTGGACAACATCAAGATCCCCTATAGGTTTCTACCTCCGCCCTACGTCAGAACAAGGCTGGACAAGCA GGATGTGAAGGACCAAAGTACTTCGAATTTGAGCTCTCCTGATACTGCTGAATCTGGCAGTGAATCACAACCAAAGCCACGATCGGTAAGAAGAAGGCAA CAAATGAAGGTAGTGGTGGGTGATGAGATTAGTCCATTGAAGCCAGCTCCAGGGCGTGCATATTTTGGCAGTTTTGATGCAGAGATATGGAAAGCATCTG ATGATGAAGAAGGGGAAGATGAAGAGCTGAAAAACAAGAAGAGAGAACAATATGAAAGACACATCGTGAGAAGTTATAAGATGAAACCTCTGTCATGGAG ATCAAGAGATCATGAGAGTGGTAAGGAAGAATTGGACACTGGATCTGCACCAGCACCACCTTTTGGTTCCCTAGGCAAGACTAGTGCAGCCATTGTAACA AGACATGGTAGGTCTCTAACAGCAGAGTCGAAGTTGTCAGTCGGGACATGTGCATCCTAA
AA sequence Show only first row Show all	>Lus10025779 pacid=23177651 polypeptide=Lus10025779 locus=Lus10025779.g ID=Lus10025779.BGIv1.0 annot-version=v1.0 MLSAELPPDELAFLLLDPFSNLVVVFMESESLFLPSVGKSLIKMTKARLDASKKKKKNVVAKYLKNDIADLLRTGFDSNAYSRTQELIFEHNSIAAYKFL EDFCDCISTNLALLDKRKECPKECREAIHSLMYAAARLAAFPELRDLRSLFAHRYGDCLELYINKEFGELLNQRLATKEMKLQLLGDVAQEFSINWDPKS LEQPPHSIQQQVSSPRDLPDCNVTKDYLFLLQNQNRKEGSNHPEDGDDKRMKSKDDVVALSSKHNRFNKYGKRESHSTSSAENLLGRSTETEVASSPRRK NNVSDEKHRLQNSSGGTESADRDSSQPSPSSMGTTSTSSASKDEVDNIKIPYRFLPPPYVRTRLDKQDVKDQSTSNLSSPDTAESGSESQPKPRSVRRRQ QMKVVVGDEISPLKPAPGRAYFGSFDAEIWKASDDEEGEDEELKNKKREQYERHIVRSYKMKPLSWRSRDHESGKEELDTGSAPAPPFGSLGKTSAAIVT RHGRSLTAESKLSVGTCAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	1.7	0.9797
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	3.5	0.9759
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	3.5	0.9790
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	4.2	0.9645
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	4.5	0.9718
AT4G22370			unknown protein		Lus10003793 [exp]	6.3	0.9616
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	6.7	0.9666
					Lus10031014 [exp]	7.9	0.9291
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10024258 [exp]	8.3	0.8962
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	8.4	0.9631

Compare expression of checked genes

Lus10025779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.