Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21390 1493 / 0 Coatomer, alpha subunit (.1) AT1G62020 1487 / 0 Coatomer, alpha subunit (.1) AT3G15980 254 / 1e-70 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 251 / 2e-69 structural molecules (.1.2.3.4.5) AT1G52360 248 / 3e-68 Coatomer, beta' subunit (.1.2) AT3G49660 121 / 8e-30 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 114 / 1e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 104 / 2e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 103 / 3e-22 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G02730 99 / 4e-22 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035883 [exp] 1977 / 0 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 1902 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 1900 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 1556 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 1447 / 0 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10037539 [exp] 595 / 0 AT1G62020 594 / 0.0 Coatomer, alpha subunit (.1) Lus10033092 [exp] 259 / 7e-72 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 172 / 1e-47 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 169 / 3e-46 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069700 [exp] 1965 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 1542 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.003G056300 [exp] 253 / 5e-70 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 249 / 1e-68 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 178 / 1e-48 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.007G009500 [exp] 114 / 1e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 113 / 6e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 111 / 2e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 108 / 1e-23 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 107 / 2e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06957 [flax] [poplar] COPI_C Coatomer (COPI) alpha subunit C-terminus CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10025780 pacid=23177457 polypeptide=Lus10025780 locus=Lus10025780.g ID=Lus10025780.BGIv1.0 annot-version=v1.0 ATGCTTACGAAATTTGAGACCAAGAGTAATAGGGTTAAGGGACTGAGTTTCCATAGCAAAAGGCCATGGATCTTAGCCAGTCTTCACAGTGGTGTGATCC AGCTATGGGACTACCGAATGGGGACATTAATTGACCGGTTTGATGAGCATGATGGACCAGTCCGAGGAGTTGATTTCCACAAATCTCAGCCTCTCTTTGT CTCCGGAGGTGATGATTACAAGATTAAAGTATGGAACTATAAGTTGCATAGATGCCTCTTCACACTTCTGGGTCACCTTGATTACATCCGTACGGTGCAG TTTCACCATGAAAACCCATGGATTGTGAGTGCCAGTGATGACCAAACTATCCGCATTTGGAACTGGCAGTCACGTACTTGCATCTCTGTACTGACTGGCC ATAATCATTATGTTATGTGTGCCTCATTCCATCCAAAAGAAGATCTTGTTGTGTCAGCTTCTCTGGACCAGACTGTCCGTGTTTGGGACACTAGTGCACT GAGAAAGAAGTCTGTCTCTCCTGCTGATGATATCATGCGTCTTAGTCAGTTAAATGGAGATCTTTTTGGTGGTGTTGATGCAGTTGTTAAGTATGTATTG GAAGGTCATGACCGTGGAGTAAACTGGGCTTCGTTCCATCCCACACTTCCTTTGATTGTCTCCGGTGCTGATGATCGTCAAGTGAAGTTGTGGCGTATGA ATGATACAAAGGCTTGGGAAGTGGACACTTTGAGAGGGCACATGAACAATGTTTCATGTGTCATGTTTCATGCTAAGCAAGACATAATTGTGTCTAATTC AGAGGATAAGAGTATTCGAGTTTGGGATGTAACCAAGAGAACTGGGCTTCAAACTTTCCGTCGTGAGCATGACCGGTTCTGGATCCTTGCAGCTCATCCC GAAATCAATCTTCTTGCTGCTGGTCATGATAATGGGGTGATTGTGTTTAAGTTAGAGAGAGAAAGGCCTGCATTTGCTGTGAGCGGAGACTCTCTGTTTT TCACAAAGGACAGGTTTCTGCGGTACTTTGAGTACTCTAGTCAGAAGGAAAACCAGGTGATTCCCATCAGGCGACCTGGTAGTACTAGTCTGAATCAGAG TCCAAGAACTGTTTCTTACAGCCCTACAGAAAATGCAGTTCTGTTGTGTTCAGACATTGATGGGGGATCATATGAGCTCTATATCATTCAAAAAGATAGT ATTTCAAGGGGTGATACTGTACAAGAAGCAAAGAAAGGGGCAGGGGGTTCAGCTGTCTTCATAGCTCGAAATAGGTTCGCTGTGCTTGACAAAAGCAGCA ATCAAGTGTTGGTCAAGAACCTAAAGAATGAGGTTGTCAAAAAGAGTGGTCTTCCCATTGTTACAGATGCAATATTTTATGCTGGGACTGGTAATGTGTT GTGTAGAGCCGAGGATAGAGTCGTTATTTTTGATCTTCAACAGAGACTTGTACTCGGGGATCTTTCAACACCTTTTGTGAAGTATGTTGTCTGGTCTAAT GATATGGAGACTGTCGCCTTACTGAGCAAGCATGCCATTATCATAGGAAACAAGAAGCTTGTGCATCAGTGCACTCTTCATGAGACAATCCGTGTTAAAA GTGGAGCCTGGGATGACAATGGCATTTTCATATATTCTACTTTAAATCACATGAAGTATTGTCTTCCGAATGGAGATAGTGGTATAATCAGAACCCTTGA TGTCCCAATATACATTACTAAGGTTTCTGGCAACACAATCTTTTGCCTGGATAGAGAAGGAAAAAATAGAAGTATTGTCATTGATCCCACAGAATATATG TTCAAACTTTCTCTTTTGAAGAAGAGATATGATCATGTTATGAGCATGATTAGGAACTCACAGCTGTGTGGGCAGGCTATGATTGCATATTTGCAACAGA AGGGATTCCCAGAAGTTGCTTTGCATTTTGTCAAGGATGAAAGAACTAGATTTAATTTGGCTCTGGAGAGTGGGAACATACAGATTGCTGTTGCTTCAGC TAAGGAAATCGATGAGAAAGATCATTGGTACAGGCTAGGGGTGGAAGCTCTTCGGCAAGGGAATGCAGGTATTGTGGAGTATGCCTATCAGAGAACACAA AATTTCGAGAGGTTATCTTTCTTGTATCTGATTACTGGTAATCTAGACAAGTTGTCGAAGATGTTGAAAATTGCGGAGGTTAAGGGTGATGTCATGGGCC AGTTTCACAATGCCCTCTATTTGGGTGACATTCAGGAGCGTGTTAAAATGTTGGAGACTGCTGGACAAATACCCCTGGCATACATCACAGCTAAAGTACA TGGTTTGGTGGACGTAGTGGATCGCCTAGCGGCTGATTTAGGAGATGATATTCCATCTTTGCCCGAGGGTAAAGTTCCATCTCTTCTGATGCCTCCGACC CCGATCATGTGTTCTGACTTAGATCTGCCTCAAGAAGCAGATACACCCAAGGCTTCCGTCAGAAGTTCAGTTTTTGTGGCTCCAACTCCCGGCATGCCTG TGAGTCACATATGGACTCAAAGGTCATCACTTGCTGCCGAACATGTCGCAGCTGGGAATTTCGATACTGCTATGAGATTGCTCCATAGGCAACTTGGAAT TAAGAATTTTACTCCGCTGAAATCTATGTTCCTCGATCTTCATACAGGAAGCCAGTCTTATTTGCGCGCAATGTCAGCCACTTCGGTGATAGCACTGGCA GTCGAAAGATGGAATGAGTCTGCGAGCCCCAATGTGAGAGGTGCTCCATCGCTGATATTCAGCTTTGGTCAGTTGGAAGAAAAGCTAAAGGCTGGTTACA AAGCCACCACGGTTGGGAAAATTACAGAGGCGCTTAACAACTTTGTCAGCATTCTTCACACAATCCCTCTGATAGTTGTGGAGTCGAGAAGAGAGGTTGA TGAAGTTAAAGAGTTGGTAATCATAGTGAAGGAGTACGTTGTGGGGCTACAGATGGAACTGAAGAGGAGGGAAATAAAAGACGAACCAGTTCGTCAACAG GAGCTTGCAGCCTACTTCACACATTGCAACCTTCAAACCCCTCACTTAAGATTAGCGTTGCTGAATGCAATGTCAGTCTGTTACAAGGGAAAGAACTATG CTACAGCTGGTAACTTTGCCAGGCGTCTACTGGAAACAAACCCACAGAATCAGGAGCATGCGAAGAAGGCAAGACAAGTGCTGCAGGCTTCAGAGAAGAA TATGACTGATGCTACAGAACTGAAGTACGATTACAGGAATCCGTTTGTAGTTTGCGGGGCTACTTACGTCCCGATATATCGGGGGCAAAAGGATGTGTCT TGCCCATACTGTTCAGCTCGGTTTGTGCCGGAGCAGCAGGGGGAAATATGCCGAGTGTGCGATCTTGCAGTTGTTGGTGCAGATGCTTCAGGTCTGATCT GTTCATCTGCCCAGATACGATAG
AA sequence Show only first row Show all	>Lus10025780 pacid=23177457 polypeptide=Lus10025780 locus=Lus10025780.g ID=Lus10025780.BGIv1.0 annot-version=v1.0 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQ FHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDTSALRKKSVSPADDIMRLSQLNGDLFGGVDAVVKYVL EGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGLQTFRREHDRFWILAAHP EINLLAAGHDNGVIVFKLERERPAFAVSGDSLFFTKDRFLRYFEYSSQKENQVIPIRRPGSTSLNQSPRTVSYSPTENAVLLCSDIDGGSYELYIIQKDS ISRGDTVQEAKKGAGGSAVFIARNRFAVLDKSSNQVLVKNLKNEVVKKSGLPIVTDAIFYAGTGNVLCRAEDRVVIFDLQQRLVLGDLSTPFVKYVVWSN DMETVALLSKHAIIIGNKKLVHQCTLHETIRVKSGAWDDNGIFIYSTLNHMKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDREGKNRSIVIDPTEYM FKLSLLKKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTQ NFERLSFLYLITGNLDKLSKMLKIAEVKGDVMGQFHNALYLGDIQERVKMLETAGQIPLAYITAKVHGLVDVVDRLAADLGDDIPSLPEGKVPSLLMPPT PIMCSDLDLPQEADTPKASVRSSVFVAPTPGMPVSHIWTQRSSLAAEHVAAGNFDTAMRLLHRQLGIKNFTPLKSMFLDLHTGSQSYLRAMSATSVIALA VERWNESASPNVRGAPSLIFSFGQLEEKLKAGYKATTVGKITEALNNFVSILHTIPLIVVESRREVDEVKELVIIVKEYVVGLQMELKRREIKDEPVRQQ ELAAYFTHCNLQTPHLRLALLNAMSVCYKGKNYATAGNFARRLLETNPQNQEHAKKARQVLQASEKNMTDATELKYDYRNPFVVCGATYVPIYRGQKDVS CPYCSARFVPEQQGEICRVCDLAVVGADASGLICSSAQIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	1.0	0.9770
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	1.4	0.9490
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	3.0	0.9234
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	3.2	0.9374
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	3.5	0.9439
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	4.6	0.9293
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	4.9	0.9320
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	5.5	0.9207
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	6.6	0.8970
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	6.6	0.9422

Compare expression of checked genes

Lus10025780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.