Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025782 [exp] 217 / 3e-69 ND / Lus10037541 [exp] 101 / 3e-26 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10038294 [exp] 87 / 4e-20 ND 42 / 4e-04 Lus10025807 [exp] 86 / 2e-19 ND 39 / 0.002 Lus10025806 [exp] 74 / 3e-15 ND 40 / 0.002 Lus10011452 [exp] 72 / 7e-15 ND / Lus10038295 [exp] 72 / 9e-15 ND 37 / 0.005 Lus10037542 [exp] 70 / 1e-14 ND / Lus10011453 [exp] 66 / 7e-13 ND 36 / 0.008
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 44 / 2e-05 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 42 / 0.0002 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 42 / 0.0002 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10025781 pacid=23177459 polypeptide=Lus10025781 locus=Lus10025781.g ID=Lus10025781.BGIv1.0 annot-version=v1.0 ATGACGACGACTAAGAAGATTTCATCAAGAGGAGTATTTCTAATGTTAACAATTTCATGTTTTTTTCCAGTTTCAACACTTGCAGACTCATCAAGTGGCT CCTCTTCATCATCATCGTCTAAATCCGGCAGTGAAGATTCAAAGGTCGAAAATGCATCAGCAGCCGTGAAAGAGATATGTGCCTCGATGGAGAAGCCAAC CAAGTGCCAAAAATTTTTGGCGAATAGCCCCGAAGCGGACCCAACCCACATGGTCAAGTTCAACCTTGGTGTATTGAAGAGCCTTGTAGAAGAAGGCACC TACATTTCGTCCAAGGACGAGCTTAGGAACCCTTCCACACCTGATAAAATGAAGGAGAGCCTCGACACTTGCATCCAGAACTATGACAAGGCCGTCAGCA GCTTGGAAGCTGCCGGAAATGCCTGCCGCGATTGCGAGAAAGAAGCCAGTTCTAGCAAGGACAAGAAGTGCAAGTCGAAGCATGTCAAAAAGGTCACGTC CATGCTAACCAAGGTCGTTTCACATTTTAAAAAGTGCAGCGAGGCGTTGGAGAGTGCGGGTTCGCCACCCAAGCCGTGGATTAAAGAGCTCGATGATGCC ATGATCGATGGTGCAGACATTTTGCTGAAAGTTGCTAAGAGAATCAAGTGA
AA sequence Show only first row Show all	>Lus10025781 pacid=23177459 polypeptide=Lus10025781 locus=Lus10025781.g ID=Lus10025781.BGIv1.0 annot-version=v1.0 MTTTKKISSRGVFLMLTISCFFPVSTLADSSSGSSSSSSSKSGSEDSKVENASAAVKEICASMEKPTKCQKFLANSPEADPTHMVKFNLGVLKSLVEEGT YISSKDELRNPSTPDKMKESLDTCIQNYDKAVSSLEAAGNACRDCEKEASSSKDKKCKSKHVKKVTSMLTKVVSHFKKCSEALESAGSPPKPWIKELDDA MIDGADILLKVAKRIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025781 [exp]	0	1
					Lus10000977 [exp]	3.2	1.0000
					Lus10000363 [exp]	3.3	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10002747 [exp]	3.9	1.0000
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	5.0	1.0000
					Lus10004996 [exp]	5.5	1.0000
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	5.9	1.0000
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	6.3	1.0000
					Lus10003285 [exp]	6.6	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	6.7	1.0000
					Lus10027602 [exp]	7.1	1.0000

Compare expression of checked genes

Lus10025781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.