Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025781 [exp] 192 / 3e-59 ND / Lus10037542 [exp] 81 / 3e-17 ND / Lus10037541 [exp] 80 / 4e-17 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10011452 [exp] 78 / 7e-16 ND / Lus10038294 [exp] 67 / 4e-12 ND 42 / 4e-04 Lus10025807 [exp] 67 / 8e-12 ND 39 / 0.002 Lus10038295 [exp] 65 / 1e-11 ND 37 / 0.005 Lus10025806 [exp] 66 / 3e-11 ND 40 / 0.002 Lus10037540 [exp] 53 / 9e-08 ND 40 / 7e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 41 / 0.0007 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10025782 pacid=23177587 polypeptide=Lus10025782 locus=Lus10025782.g ID=Lus10025782.BGIv1.0 annot-version=v1.0 ATGATGACGACGACGAAGAAGAATTCATTAAGAGGAGTATTTCTCATCATGATGATGGTGATGTTAATTTTCTCATGTGTTGTTCCGATTTCAGCTGCTG AGAAAGAAGAAAAAGCTGACTCACCAAGCGAATCCTCCTCATCTAAATCTAAATCCGACAAGAAAGATTCAAAGGACGAGGATGCATCAGCAGCAGTGAA GGAGATATGTAAGGCGATGGTGAAGCCAACCGAGTGCGAAGCATTTTTGGCGAATAGCCCGAAAGCGGACCCAACCCACATGGTCAAGTTCAACCTTCGT GTCTTGAAGACCCTCGTCGAGGAAGGCACATACATTTCGACCAAGGACCAGTTCAAGAACCCTTCCACGCCCGAAAAAATGAAGAAGAGCCTTGAGACTT GCGTTAAGAACTACAACAAGACGATCGATGCCTTGGACGCTGCAGCAGATGCATGCCGCGATTGCGAGGAAGAAGCGAGTTCTGACAAGAAGAAGAAGTG CAAGCCGGAGCATGTTGAAACGGTTACCTCATCACTAAAGGAAGCAGTTAAAAACTTCAAAAAATGCACCGCAGCATTAGAGGATGCGGGTACCCCACCC AAGCCGTGGATTAAGTCGCTCAATGAAGCCATGATTGATGGTGCGCTCTTTTTGTCCCAAATTGCCTCCAAAATTAAGGACGAGGATGCATCAGAAGCAG TGAAGGAGATATGTAAGGCGATGGTGAAGCCAGCCGCGTGCGAAGAATTTTTGGCGAATAGCCCGAAAGCGGACCCAACCCACATGGTCAAGTTCAACCT TCGTGTCTTGAAAACCCTTGTCGAGGAAGGCACATACATTTCGACCAAGGACCAGTTCAAGAACCCTTCCACGCCCGAAAAAATGAAGAAGAGCCTTGAG ACTTGCGTTAAGAACTACAACAAGACGATCGATGGTTTGGACGCTGCAGCAGATGCATGCCGCGATTGCGAGGAAGAAGCGAGCTCTGGCAAGGAGAAGA AGTGCAAGCCGAAGCATGTTGAAACGGTTACCTCATCACTAAAGGAAGCAGTTAAAAACTTCAAAAAGTGCACCGCAGCATTAGAGGATGCGGGTACCCC ACCCAAGCCGTGGATTAAGTCGCTCAATGAAGCCATGATTGATGGTGCACTCTTTTTGTCCCAAGTTGCCTCCAAAATTAAGTCCGATTCTAATTAA
AA sequence Show only first row Show all	>Lus10025782 pacid=23177587 polypeptide=Lus10025782 locus=Lus10025782.g ID=Lus10025782.BGIv1.0 annot-version=v1.0 MMTTTKKNSLRGVFLIMMMVMLIFSCVVPISAAEKEEKADSPSESSSSKSKSDKKDSKDEDASAAVKEICKAMVKPTECEAFLANSPKADPTHMVKFNLR VLKTLVEEGTYISTKDQFKNPSTPEKMKKSLETCVKNYNKTIDALDAAADACRDCEEEASSDKKKKCKPEHVETVTSSLKEAVKNFKKCTAALEDAGTPP KPWIKSLNEAMIDGALFLSQIASKIKDEDASEAVKEICKAMVKPAACEEFLANSPKADPTHMVKFNLRVLKTLVEEGTYISTKDQFKNPSTPEKMKKSLE TCVKNYNKTIDGLDAAADACRDCEEEASSGKEKKCKPKHVETVTSSLKEAVKNFKKCTAALEDAGTPPKPWIKSLNEAMIDGALFLSQVASKIKSDSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025782 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	1.7	0.9863
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	2.4	0.9850
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	3.0	0.9837
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	3.5	0.9655
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	4.5	0.9605
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10020064 [exp]	6.4	0.7869
					Lus10021407 [exp]	9.2	0.9304
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	11.5	0.9099
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	13.0	0.8927
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	13.1	0.8883

Compare expression of checked genes

Lus10025782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.