Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15260 89 / 7e-22 unknown protein AT3G16070 72 / 1e-15 unknown protein AT3G24535 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035880 [exp] 343 / 3e-121 AT1G15260 94 / 4e-24 unknown protein Lus10037547 [exp] 102 / 3e-26 AT1G15260 88 / 2e-21 unknown protein Lus10011448 [exp] 100 / 1e-25 AT1G15260 89 / 9e-22 unknown protein Lus10023639 [exp] 94 / 1e-23 AT3G24535 72 / 4e-16 unknown protein Lus10034910 [exp] 91 / 8e-23 AT3G16070 72 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053600 [exp] 168 / 3e-52 AT1G15260 100 / 1e-26 unknown protein Potri.001G182500 [exp] 143 / 7e-43 AT3G16070 97 / 2e-25 unknown protein Potri.018G080001 [exp] 95 / 1e-23 AT1G15260 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025783 pacid=23177660 polypeptide=Lus10025783 locus=Lus10025783.g ID=Lus10025783.BGIv1.0 annot-version=v1.0 ATGCAGCTGAGAGAATCCATTGACAAGACCAAGACTTTCCTCCAAACCACTCTCCTAAACCTCAAGTCTCTTCTGTTTGATGGGTACCAGAAGCTTCCCA GACCTCATTTCAACCCTTTCTCCTGTGGCAATGGCGGCAACAACACCACCAACCCAGATCACTTGGCAGATCATGAGTACTACACCAACTTCTGCAATGA GCTTGAGTGTGATCTTGACAAGATTACGAGGCTGAACTGCAACACCACAATCATAGGAGACATTCATCAACCAACTTTCCATGCTGTGAGTCCCTTGAAG GAAGAGAAGAAGAATAGCAGCAAGAAAACCAGTGATTGTAAGATATATGGCGTTGAAGAAGAAGAAGAAGAAGAGCAAGGTTCATCAATCAGGAAGAAGA AAAAGAAGAAAACTAAGAAAAAGAGTAGCAATGAAGACAGCTACTTACTGGCAAGGAAGATGAAGGAGCTGGAGATGATGGATGTGAGTGATATGGAACA TGTTCTGGATGTTGAAGAGGCTATTCACTACTATTCTCGACTCAAGAGCCCTGTCTATCTCGACATCGTTGACAAGTTCTTCACTGATATCTACCAAGAC TTCTCTATCTCTCAGGGATCTTCTACTGTTACAGTCAACAGCTCTAAAAGGAGGCTTGGCTCCTTCAGATTATAA
AA sequence Show only first row Show all	>Lus10025783 pacid=23177660 polypeptide=Lus10025783 locus=Lus10025783.g ID=Lus10025783.BGIv1.0 annot-version=v1.0 MQLRESIDKTKTFLQTTLLNLKSLLFDGYQKLPRPHFNPFSCGNGGNNTTNPDHLADHEYYTNFCNELECDLDKITRLNCNTTIIGDIHQPTFHAVSPLK EEKKNSSKKTSDCKIYGVEEEEEEEQGSSIRKKKKKKTKKKSSNEDSYLLARKMKELEMMDVSDMEHVLDVEEAIHYYSRLKSPVYLDIVDKFFTDIYQD FSISQGSSTVTVNSSKRRLGSFRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15260			unknown protein		Lus10025783 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	2.8	0.8527
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	10.4	0.8287
AT1G15260			unknown protein		Lus10035880 [exp]	11.2	0.8706
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	14.7	0.8496
					Lus10016109 [exp]	17.7	0.8329
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10005369 [exp]	18.5	0.8479
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	18.9	0.8192
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	19.4	0.7936
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	19.8	0.8418
AT1G29530			unknown protein		Lus10011974 [exp]	21.5	0.7686

Compare expression of checked genes

Lus10025783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.